Protein Info for mRNA_4686 in Rhodosporidium toruloides IFO0880

Name: 13054
Annotation: HMMPfam-COMPASS (Complex proteins associated with Set1p) component shg1-PF05205

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF05205: COMPASS-Shg1" amino acids 16 to 81 (66 residues), 29.7 bits, see alignment E=4.6e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>mRNA_4686 HMMPfam-COMPASS (Complex proteins associated with Set1p) component shg1-PF05205 (Rhodosporidium toruloides IFO0880)
MANAGPSTAPELTPKQLAEQWKRQGGLDALRKQLLQDFLASPDRDQLLSSLDTLLPTLLS
SSTTLTRLPRKDRPAAVLRTLQQRSALREPVGKLEGELRSGKGKGKRVERELRRCLCEAR
GVPFVEEEDVEEEMKIEVKAEERVKAEGKAESTPSSPQAFAMPASTSQPVAAAPPAPSSS
LSDPPAQPTDTSPPNPPAFAPHNAPEPTIEATTAAQDAHAGVETTAEVSRAADGDVEMAD
AAAPTQNGSSSTTA