Protein Info for mRNA_4697 in Rhodosporidium toruloides IFO0880

Name: 13065
Annotation: K05291 PIGS phosphatidylinositol glycan, class S

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 797 transmembrane" amino acids 32 to 50 (19 residues), see Phobius details amino acids 353 to 370 (18 residues), see Phobius details amino acids 376 to 396 (21 residues), see Phobius details PF10510: PIG-S" amino acids 37 to 75 (39 residues), 35.2 bits, see alignment 3.6e-13 amino acids 87 to 403 (317 residues), 323.5 bits, see alignment E=1.4e-100

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (797 amino acids)

>mRNA_4697 K05291 PIGS phosphatidylinositol glycan, class S (Rhodosporidium toruloides IFO0880)
MSESPTEAAVEASKPGPRLNPPSPSVDTRSRRWIVLCFWAVVLLGLPLWWKTTTLERRSL
PGSRVHEWAENWQERIPRRDDLRDGTDPRVVRFSSHYKVVLSLLNQDASQGGAVLTWDAP
SLIRQHLRPLLTTLAPLHNFTFETQIQYFSPLAIELHRDEGAGTLVEENDLRAFVNNADW
NLATGDTLDPVIHLMLYVPSAENRPMRIRAGDDSKPTSAFIMPQRGGVVILNPPSSSFES
PPSVSLDLPSSAFAPSFRLFEQQLRILLGLETLRSGGAEQSQVDRLVHRRTREAVEDCVE
TLQATVKMARDIPNMRIGKEVQERVKRALDELDKASSATDPVDALRHAALAQTLASQAYF
DPSMVALLYFPDEHKYAIYTPLFGPVAVPLLVGLLREFREWKKARKEKKAGVRRTENGDE
DVGVVALRVEAAYKPFGRPRTPLKPFSTPPDRPAPPHQQAWTSPAHLLTATRLCWLRRMP
HKRAKRSLRLAASEAKGVDNPPTAADSLLPIPTTTEGKDAAGTADGEKRNKKRKKAGSGA
GPVDTGGMSKSAFRILNAAKLREEYHAKKKRKVEEETKGKNPNQQKKPSAIQPLPYESLS
SFNHRVEQEMRHSVRTAIKDASNAAQKRKDRKGKAKQTADEDEEEEEDSGVTKDKNGKPV
AKKAKPTPEESLDPFAKPKVQREQQQLEQAKSRSGRTEFAAADLRRRIDDVVQAPPTLAD
PARKGLMQKVLGPGGAAACGTTSEGPGTFKLAGPDAPVGSSRLPINPAMKAMLDAERERA
VKMYRQLKEQREKERAK