Protein Info for mRNA_4712 in Rhodosporidium toruloides IFO0880

Name: 13080
Annotation: HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 952 PF10358: NT-C2" amino acids 239 to 353 (115 residues), 42.8 bits, see alignment E=2.2e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (952 amino acids)

>mRNA_4712 HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358 (Rhodosporidium toruloides IFO0880)
MRIGETLGFSKTATFLATVTVHELVQVPLLNAKFRIKWKFKGATHSSALDDPANSHHSAR
AAAGFAEASRRFLHPRTAALSSSQGSSASASDGGATEKEGGLSRSRSGSPLGMAWSSEEG
GDARTARGGRPLSRGITPPVSPDQDPRPRSTSREGGGMAFTSPFSKDGNETLYTSPPPGS
RSGNGTPHDSHPASPDGPDLMRRRGAGDLSSMPLTSPPSGSSSRNVSGPTAIAHRPEPKG
TTTFVPLRSHTATFNREITCPVLVTLRAVGGGKYELQTSPVRFAIKQEVVLEDGKREEER
LGEVLLDLSQFAKPNGAASDVAKPRRYLLQGCKSNAVLRVSVKMEWLDGERNFVAPIPRS
AQIATGSPAAKGLVSTTNSPASRSTLSLNHKSSATNLNGASTPNGRPRTSSSTTSTSASR
FSLRRTNSVSSAGSSSLQNGAGSPEMSRTSSRQGPANDRLAVPGSESRQGSGSSASTSAN
SALSISIPGGRNSNKKEKSRGKDKKHKKGGWHPPRSSVVGAFAYATAGSAAPFETGVGAS
MGTATDRSATDVIDAIFNRPARPTYSTRPSWAVERSDTEGGGKMSGTSTPTGRLGAPFEY
PQGEAKQHHHLGINSHHFGFDRFKGKKGAPKEKEEGKRVPSQAWSMRSVSGSNNKEKEKV
LQETVSPTGVAALPTFPSAREDPPTPIGATYAQVEAPAVRKKQEERAKLVRDVTYEIGVA
RGEQQCTYDALDGDTSSSDDGEGRDGRRATGAKSRFHPPGPSVEVQPPTPQIPFPRTDSS
PALASRATARPKPPSPSSSAHSSAANSAKPLSVRWGDQSTSTSSSAGSTSSSAAPSPATS
VLPSPSHRQLRHQRSTDSALSVGRQSTRSAPLDTPSSASRQSHTSRLDPPPSRPASSLSF
NSFVTPPSPPPVKDKRHKWGVLGVNGGRKERRSMEKPGERAPGGIEWGKSWA