Protein Info for mRNA_4713 in Rhodosporidium toruloides IFO0880

Name: 13081
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1038 transmembrane" amino acids 388 to 405 (18 residues), see Phobius details amino acids 536 to 555 (20 residues), see Phobius details PF00172: Zn_clus" amino acids 101 to 132 (32 residues), 28.6 bits, see alignment (E = 1.3e-10) PF04082: Fungal_trans" amino acids 349 to 555 (207 residues), 26 bits, see alignment E=4.8e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1038 amino acids)

>mRNA_4713 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MDSIPRTLDFPAQSASSTPQPQPLPVPTASTSSAIPAKRKLDAATPPAGKAKAKGKSAAT
TAADGTAGEEDELDEDGQDGAEGEGGGESKPKKRRNRMALSCKECKRRKIKCDRVMPICG
NCTKRGKPSECAWDVLQPANDVYLPPNLARTSDLEALAARLAHVEKYLRTLPPNLAPFRP
LDIVPIVPKDRPGEVSDGRGGGKKRKLIGAMDDEAFSDTEDAAVQLENGVFRPTETVSTG
LTTSLVAPTRPNGLMPSPQPPSLMRATSTTAAASLSFAASRFGAPQVELTKALTSIVSPP
VNSASSSLLAHLPVDFDATPEQVAQARADEIDRIMRTLPGRDAIGYLVERYFDNVAWLFH
HLHAPSFRAEVEAFHTLCNRNRQHSIDLPWLALLLMVLSLALDSLHHSRSPLALDPTRTM
VEEKDHPLEAYAEETLKKMPERWFGASVRALRLAEFETVPRIRSIQTIILYTQYLQLSSA
DRGEPSQRVVWLSSAVRLAQVLKLHQLGSNPETMPPDDPAFPPGKNSIKREMAKRLWAVL
VYQDWLFATRVNLYYTISPLHCDTDDPLNVNDADLSPSKTALTPAPSTVLTDSSADRVRI
ATARQARAVFDRTVLVKDYSAQTIADLDAGFRLILDELPERWTLAADEHEQPMLRFQRHF
VLEGLHNRIFRLHRPVFSKAQKNPALKFSADACLKSARAVVVSTHNIRDAVSDVPYTYTH
VLGAALVLFQDIFQAIKHDLSTIEIESKMSTLQLALEIFSAKPSSPSLAAHVPQGHKILS
GLLREVERRRANRAAKALIRAAAATAGENGSAVEPLEEDEEEESFSDVLARIQRSLTADS
APHRGTPPPTRNIPSKVRGEGARGQNCSSADGAPSWQQTAGAAPLDPALSSASTSLPPVP
VDLSCSLLPPTSTALSFPLGSDFDPEPWPFPAPDPSANHLSLFAAVDPDISFDLGGFSGF
GSQFSSGSGLDFGATNGNALGDDLLTGFVGGVNDGGTSAAGVAVTPSAWAVPEAAAGTRE
MTDAEAAAAYWGTAGRTA