Protein Info for mRNA_4737 in Rhodosporidium toruloides IFO0880

Name: 13105
Annotation: K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 transmembrane" amino acids 39 to 56 (18 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details amino acids 158 to 173 (16 residues), see Phobius details amino acids 182 to 199 (18 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details amino acids 319 to 341 (23 residues), see Phobius details amino acids 351 to 370 (20 residues), see Phobius details amino acids 375 to 393 (19 residues), see Phobius details PF04142: Nuc_sug_transp" amino acids 39 to 246 (208 residues), 196.5 bits, see alignment E=6.7e-62 amino acids 265 to 392 (128 residues), 100.1 bits, see alignment E=1.5e-32 TIGR00803: UDP-galactose transporter" amino acids 127 to 243 (117 residues), 103.8 bits, see alignment E=5.4e-34 amino acids 265 to 391 (127 residues), 61 bits, see alignment E=6.7e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (396 amino acids)

>mRNA_4737 K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3 (Rhodosporidium toruloides IFO0880)
MALRQRRKGSPAPVDATDDARTKQRSPGAASSPLIPRRTLALVLLCVQNASVSILTRQSR
TTSSRSLYNPSVAVFTAELIKAALSISMLAVERRKTVTAKEGRGGYLWHAGAAVQDLARN
QRTEVVKLAVPAMLYALQNTLLYVALSNLDAATYQTTYQLKLLTTAIFSILFFRRSLSVQ
KWISLILLTTGVAIVQLESSEPKPTPTRHAALSQDPTKGFAAILAACLSSGLAGAWFEWV
LKSPSSPVPTPAATPDSPKSPSLQLRKNSPSLWARNLQLSVPSLLFSFSGVLLSSPIRSA
FEKRGVEGAVRALGGMWTGFSPLVWCVVLNQALGGLLVAMVVREADSVAKGFATSIAIVL
STLASAVLFGVVPGTMLIIGGLLVISSTVLYSLDKD