Protein Info for mRNA_4741 in Rhodosporidium toruloides IFO0880

Name: 13109
Annotation: KOG2208 Vigilin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1363 PF00013: KH_1" amino acids 234 to 311 (78 residues), 37.1 bits, see alignment 3.3e-13 amino acids 586 to 643 (58 residues), 22.7 bits, see alignment (E = 1.1e-08) amino acids 662 to 723 (62 residues), 38 bits, see alignment 1.7e-13 amino acids 740 to 805 (66 residues), 40.9 bits, see alignment 2.2e-14 amino acids 816 to 889 (74 residues), 37.3 bits, see alignment 3e-13 amino acids 902 to 966 (65 residues), 42.5 bits, see alignment 6.9e-15 amino acids 1061 to 1135 (75 residues), 22.8 bits, see alignment 1e-08 amino acids 1289 to 1346 (58 residues), 32.9 bits, see alignment (E = 7.1e-12)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1363 amino acids)

>mRNA_4741 KOG2208 Vigilin (Rhodosporidium toruloides IFO0880)
MQPLSAAQRIQQAHEAAQHAPASDSTHVLTEDPFPPFGFVAHDPFPPANLAPPVPAPDAP
QKPNKSSQVDVSDESAFPSLGAPVANGKSKASSSLWGSGAAALRAKQAPAAAADGTRDLS
PAPSGSTRSSTPAAAAAGVSSTTLQISTASISISPPASYAHKGPRGFSNERREVPTTLGE
VIKEVQRRIEGVVIDASSSRNLTTFIVKAKGVKAEEKVEKARNELLAWLEKKVTEEVQVP
KSLRAVIIGAKGRTLKTITDSTGASVQIPRDDELDSTPTDSTPTDSEDGPLISISLSGPQ
SAVDSARAQILAIVRERTSKTSTRLPDIPSEFWALLGARVEQVLERAGVSKEEVRVDVPH
RWMGKRGVDVVNESGEEAAADEKKEKERAIVVSGDKEAVKKVVAELEAELAELRATVRPV
TFPLPKRQHRFLVGSAIADQILHQTGCAVEVPPAESPSEDVVVRGPARETVKAMQLVMDV
ASATPVETLDLFTAHRGAHDPRAYAAQLARFLIVKSRLRPIALASGTQIYLPRLEAIPAS
QNAWLEIVGSSGESGTGVAGVAQARQAVISEVRKLPPGVFDIVRVEPLVHRHLIGKKGAK
VRQFEKDHSVEVVFPPSEQGRDDVLLVYTGEHYAGPEAKQALEQVKQAIEALAGEFADLT
STSIEIPAALHGAVIGQGGTTLNAVIGEDKLVHVQFGGAGAKEDEVTIRGPKDEVERVKK
ELQRIAEDAKNEEIVNSHVIEFEIPSEHVRHIVGKAGSGVNKLREELGVRVDFGDQAGAA
KKGSASKVTVRGRKENAEEARKRIKSLVTRMADEVTLTIPLPSSLDRGSLIGKQGMYLKR
LQEKYDCVINFPKDGRRGDSTDSAPSTPSSSEITIRGPSKGAKAAQGELVALIEYEKEHG
NTVSFEVPVKALPRILGRGGSQVNQIKDETGVASLDIDQEDKEATSATITLRGTKSSIKK
AREAIEKIAKEVQDELRIEIDIPREYHTTLIGSGGSSIRDLIARCGGPTDARASGNTVRF
PRQGDAKDTVVITAPTSVANKIKAALESEVASLASRVVWGVVVPSANHATVIGHGAQALQ
DLQRKHGVKVVMPGWKDFAEAGEPENQDELADANERDVVKVVGPKEAALAAAADLQAVKG
RGAGAASGSSTPSGHSVEVLVPKKLHAQVAQGGRFFRSLPSGTRVSHRGVKPPSSTLKAK
KPPAPASNGAAPAARIDDDADASNGVEEEAGIDFQLVSLHDEGDANGADADETIPWVVES
RSAEDAEQVAEDIRKNLARAQQASHVGWVTVPRGLMPRIVGRGGAGLDRLRATGVEVDVV
GKRDANQLTLTGSPSAIDSAYDIIRELNAPRPPRGRRNQEYDD