Protein Info for mRNA_4764 in Rhodosporidium toruloides IFO0880

Name: 13132
Annotation: K12842 SR140 U2-associated protein SR140

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 816 PF00076: RRM_1" amino acids 245 to 321 (77 residues), 34.1 bits, see alignment E=1.9e-12 PF01805: Surp" amino acids 415 to 460 (46 residues), 41.4 bits, see alignment 1.2e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (816 amino acids)

>mRNA_4764 K12842 SR140 U2-associated protein SR140 (Rhodosporidium toruloides IFO0880)
MDPRRRLALGGDSDDESPFKAAPEVAANKIARYSGQPRKSKLEREKEAEAERQRKEEEEA
ARAYREFVEAFGGEEETGPSTGVRPGVSRIKTLGKGFVKAGGAEKYNPLAQGGAASAGPS
SAPTMAGVPTGPRIPTGPRAMMQSAPSAPAPPTGPASKARPTAASLMGEDDEPETPVKPG
PLGRKKREGDNFLEQLKRDQAAREERLKQTAGRVGASVTALAAREHAPVLTGSYDLGDPL
TTNLHVGGLPANVTEDAFGKMFAQFGPIGSIKIMWPRLDTGQLATTGGRKLGGFVAYLRR
PDAERAAKDMDGAEWGDNVLKIGWGKAVPLPATAIYEPDPDSSYYRDRGTSSHLHSHSRH
HRKSRSRSRSRSKSPDDPHEFLRSKRRRSSRSPRPKGTRGWPELEEGVSESFLVTVARKV
RDNGKSFEEILRDKERENPKFAFLRDDKLPSFHYFRMLVDPDYAPPLVASFEDEGNADVY
SSDSSESSEDERVGKGRLGKLAQKRFECLLRGLTSSRDKIARGMAFAIEHADCAAYIADI
LVCSLTIDSTPVPRKLARLHLVSDILHNSAAPVPNAWTYRSIFEPKLPAVFDHLGDIYLS
FPGRLKAEQFKGLIEKVIDVWANDWMLFEPSVIEDFKRRLSGLELAEDEVGSEAPAEDAT
MDIDSFISSVPPPAASEPASAAPSPPPPEEPAPAKSGFKPSFKAAAFAPAQPEPAAEEST
AQAMGEDVDGAPVEDDVDGALVMEDDVDGAPVEDVDGAAAEQDVDGAPVGTEDVDGAPVD
AVVEEKKAEPETLVLEGSDDGEAMDMGSDEDGDIFR