Protein Info for mRNA_4797 in Rhodosporidium toruloides IFO0880

Name: 13165
Annotation: K02901 RP-L27e, RPL27 large subunit ribosomal protein L27e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 PF01777: Ribosomal_L27e" amino acids 52 to 136 (85 residues), 122.5 bits, see alignment E=3.7e-40

Best Hits

Swiss-Prot: 67% identical to RL27B_SCHPO: 60S ribosomal protein L27-B (rpl2702) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K02901, large subunit ribosomal protein L27e (inferred from 76% identity to cci:CC1G_09504)

Predicted SEED Role

"LSU ribosomal protein L27e"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>mRNA_4797 K02901 RP-L27e, RPL27 large subunit ribosomal protein L27e (Rhodosporidium toruloides IFO0880)
MPKIYKPGKVALVLSGRYAGRKVVVIRQSDEGTKERPYPHAIVAGIERYPRKVTKSMGKK
RIEKRSKVKPFIKSINYNHLLPTRYALELEGLKGVVAPETFKEVSSREDSKKQVKKLFEE
RYLQGKNRWFFTALRF