Protein Info for mRNA_4823 in Rhodosporidium toruloides IFO0880

Name: 13191
Annotation: K12191 CHMP2A charged multivesicular body protein 2A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 PF03357: Snf7" amino acids 21 to 191 (171 residues), 134.1 bits, see alignment E=2.1e-43

Best Hits

Swiss-Prot: 57% identical to CHM2A_XENTR: Charged multivesicular body protein 2a (chmp2a) from Xenopus tropicalis

KEGG orthology group: K12191, charged multivesicular body protein 2A (inferred from 69% identity to ppl:POSPLDRAFT_88603)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (246 amino acids)

>mRNA_4823 K12191 CHMP2A charged multivesicular body protein 2A (Rhodosporidium toruloides IFO0880)
MNIVETLFGRTKTPAERLRQHQRALQKAQRELDRERSKLEQQEKKLIMDIKNGARKGEIG
SCKVMAKDLVRTRRYVSKFYTMKTQLQAVSLRIQGMRSNQQMAEAMKGATKAMSLMSRQL
NLPQIQRILQDFEKESSMMDMKEEMMGDAIDDAMEDDVGETEEEEGDRILEEVLAEIGVS
VGQQLGEAPTALPASKVSEPGVRRAVAVGESAGPSLAGGAASSAGPAGGDAGLDDLQARL
DNLRRD