Protein Info for mRNA_4850 in Rhodosporidium toruloides IFO0880

Name: 13218
Annotation: K02309 DBF4 regulatory subunit for Cdc7p protein kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 719 PF00533: BRCT" amino acids 168 to 221 (54 residues), 25.4 bits, see alignment 2.3e-09 PF08630: Dfp1_Him1_M" amino acids 281 to 400 (120 residues), 110.9 bits, see alignment E=8e-36 PF07535: zf-DBF" amino acids 590 to 633 (44 residues), 69.4 bits, see alignment 3.4e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (719 amino acids)

>mRNA_4850 K02309 DBF4 regulatory subunit for Cdc7p protein kinase (Rhodosporidium toruloides IFO0880)
MATATTPNSHRQATQSHNSRTHSVRTVSCAQLAQDSRPPAPPFVEQQLRFVQALGGGAND
VGPTSVPMQTSRIDGRTAAAAAAAAAGSRKRAAVEQDDTRSPDAADKRQAKRSRGANPLA
ALSVNVAAGGAEKGAADGTKRKSRKTYAGAEKEKLQHESQQWRAKYRKAFPSFTFYFDAV
DDSTKASLSAAVKKLGASVDNFFSKKVTHVVTSRPLPSTSGKENAGAAASKASTSASAST
SRSKKTSARSPKTYELPNGQKLWPLANATDHDKNPFIDSQDILSKALDFGLKVWASEKLQ
LIIDRINHASPNKDKASLQRDPSLPTLLRDEQLYGTRERDPLVARADMHYFPSTKSYLLV
EDSTGEHRPIVVKEYERPKKNEVPSWPVLWGGIEGRTGFYYYDGPEITYERRVPPRPAPA
PAATNGKAGGFGSTAARAVAPNLRRAVSLQNVARGQQATYGYAGYEPAGRRDSYIAASGN
SQIITSNIQSATSTAARSGTAQANRFGNPYVDKRLAVLSNRTVSVAGGSILGSGSTAGGS
GGVASGSAGGSGGRLAALKRSERPGALKRSLSVDGHLARVPNPPVRDEPKKAGYCENCRI
KYDCFREHVRSSKHRRFALNPKNWADLDKLLQRIARKPLEAGEWERGEEGASSELAADEG
EYEDSGYFDASVLAGDAEECEGDSAQDDGDEDEVMDEEEEEEESSKPLEAQVLAQAVRA