Protein Info for mRNA_4851 in Rhodosporidium toruloides IFO0880

Name: 13219
Annotation: K06679 MAD1 mitotic spindle assembly checkpoint protein MAD1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 802 PF05557: MAD" amino acids 121 to 790 (670 residues), 167 bits, see alignment E=3.4e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (802 amino acids)

>mRNA_4851 K06679 MAD1 mitotic spindle assembly checkpoint protein MAD1 (Rhodosporidium toruloides IFO0880)
MDRPGAGPPYETPLVSSRTLRTAVSSVGSSRLPLRHNAATPSEPQTVGRSSLLRRPSSGD
LAGSYGNAPATVSRLPMRRPSLSNGSQMDPPLSARPDSRISSLKRRPSAADLQQESETAS
LKRQLARALSQVEEFKHAAERQKLEAAMAADKAQSQMNEYSARIEKLERHRAILLGKERE
AAEREERRKEDEDGAKEKLEKEVRSLRSQLDSLKDEHIDLQESFTDLEHSANQAVAQANH
HQARTTALQQELELVRQESEDRLRTVTEEKKKRVALEAELEQEKLRAKDPGDSAVIREEL
HRQVSTLRTLEKENGKLQRKVETYERQHANIELLKETNRSLERKVKAAEELRQQLAGQAV
ELELLRREKADWSAFVKPEDTDTFSSPRKITKNLAATRIENATLRDRLNTHELELQRRDR
IIGQLEAKAVELENQLQQAAKELDATKEKARVDGAQAVLLRQEVAMLKRHLDSYATEEAN
HNAGNYDAQKTARLVELEELLEAHKREVANLTQQVSHWRGLVERYGGNTTEILELEEREK
QEGESEGAVSKSLEEQLRLNEELQRELDEARNELALMEQELEALSTQVEQLEENQGIRGA
YNPETTKVLEFRDSPDRVEHAIRTATLERLQNENQALLRRLGDVERGALARQGAGAQQLV
PRESLVSAQAEADKLKALVQQKETMLKRIGQAVAEKTEAMRLAVQKLLGFQLSFLESGRI
RVTSVYAPSKDRSLAFDPWPGGPMPFKLVSATDEKVMSIDEVRRSIGFWLDGRQSLPGFM
ASLTMALYEETTHGQAGGVVFG