Protein Info for mRNA_4860 in Rhodosporidium toruloides IFO0880

Name: 13228
Annotation: K13237 DECR2 peroxisomal 2,4-dienoyl-CoA reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 PF00106: adh_short" amino acids 17 to 206 (190 residues), 134.3 bits, see alignment E=5.9e-43 PF08659: KR" amino acids 20 to 179 (160 residues), 45.6 bits, see alignment E=1.2e-15 PF13561: adh_short_C2" amino acids 26 to 256 (231 residues), 177.8 bits, see alignment E=4e-56

Best Hits

Swiss-Prot: 47% identical to DECR2_ARATH: Peroxisomal 2,4-dienoyl-CoA reductase (At3g12800) from Arabidopsis thaliana

KEGG orthology group: K13237, peroxisomal 2,4-dienoyl-CoA reductase [EC: 1.3.1.34] (inferred from 59% identity to mgl:MGL_1622)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 1.3.1.34

Use Curated BLAST to search for 1.3.1.34

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (284 amino acids)

>mRNA_4860 K13237 DECR2 peroxisomal 2,4-dienoyl-CoA reductase (Rhodosporidium toruloides IFO0880)
MAQQTASVFRPDLMKGKVAFVTGGGSGICYGITKQLMAHGANAAIFGRRKANVESAAQEL
SKETGSKCIGISGDVRKIETLEAAVKQTIEEFGRIDFVIAGAAGNFLAPLDGLSSNAFRT
VLEIDTLGTFNTFKSTIDELVKTKGSLIAISATLHYTGMPLQAHVSAAKAGVDAFIRAVA
VEYGPRGVRANCIAPGPIAGTEGMDRLMPKELVDKHTSMIPLQRYGSIDDIAWTALFLFS
PAASYVTGTVSIVDGGDWHMSGAIGGAPYPDAFSGAGEAPTSKL