Protein Info for mRNA_4864 in Rhodosporidium toruloides IFO0880

Name: 13232
Annotation: KOG0603 Ribosomal protein S6 kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 PF00069: Pkinase" amino acids 20 to 293 (274 residues), 213 bits, see alignment E=7.7e-67 PF07714: Pkinase_Tyr" amino acids 22 to 287 (266 residues), 114.7 bits, see alignment E=7.4e-37

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (358 amino acids)

>mRNA_4864 KOG0603 Ribosomal protein S6 kinase (Rhodosporidium toruloides IFO0880)
MHLFDYISGQPQTHHRKRHYTIRETLGVGGFAEVKRATALDTGREVAIKIIPKTRIRDMT
QQIFRQNTLLTLKHPHIIETIEWFESKGHIYIVFELAAGGELFEHLIESPNYRFSEAEAR
EVMYALVDGVAYLHSRNIVHRDLKPENVLYRTPPGSHPEIGHDDCVISDFGLAAYVDPKG
GRLHTVAGSAGYTAPEVYPEEGVVDGRGQGRGYGLKVDVWSLGIIAFCCLGGRFPYKETE
PAKLADEARRTKLYFPRSWENVSETAKDFIRRLLTVDEDERPTAAEALEHPWLRVALSRP
PSPSGHPAAAPAQQQPDYHPDDHHLGPTLSRTDTLTDHAPIIEKRGTFSSDTGDRAVV