Protein Info for mRNA_4876 in Rhodosporidium toruloides IFO0880

Name: 13244
Annotation: K20133 USP6NL USP6 N-terminal-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 738 transmembrane" amino acids 650 to 670 (21 residues), see Phobius details amino acids 676 to 694 (19 residues), see Phobius details PF00566: RabGAP-TBC" amino acids 459 to 672 (214 residues), 154.9 bits, see alignment E=1.2e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (738 amino acids)

>mRNA_4876 K20133 USP6NL USP6 N-terminal-like protein (Rhodosporidium toruloides IFO0880)
MSAIAQALTSEDERAIQLHGSPGRGSRLSVQPPASTSLKASGMGGAVGAGVEELDGSRLT
GSGGFVGGAVTPPPRTTSLAPSSVHDSPEQPRSREPSTSSVASSQAGRLFSSNEGINSRA
PPQMPTNGKPAQTDALPPAILAHPPQLATSSSATFPSASATPPQHSTPQRIATASSSAHP
SPAMPSFPSNRTLANSNSLSVSSSYSNVTSNSSHLPAPNASPYPPSGASFNSFTDPDGVA
ALVQQLYARLDEQGVPGDGWSEGKERSRDGIILREDLSTEGLNRSTASKGKHVALPMSPE
EEAKADHVLKRVDRYGFFSQSHPAALGSQHNRLATLSASPFSTIPSLSSKRTPRPSTSGT
TSAKPSPARPDARTHPNRQSIVSLLPSTDIAPESTARETRRIDKWSAMLSVARRDPGGNA
QDWVIASSWWSGRVPGGGGGQSGKYRKLQRRVFKGIPDRWRRAVWGLMMEKMASEVGPSG
QGRLPSLDELKREYEQLLDQPYVQDTQIDLDVPRTISGHVLFHTRYGQGQRALFHVLHSF
GLRSEEVGGYCQGMGPIAATLLCYFEPERAYACLSRLFDQYRLEHIFAPGFPGLVEAFYV
QERLVELLMPAVHTAFTDNFISTSAYATKWYITLFANTVPFSTQLRLWDGFFLEGLDFLV
VTAVAIIWHFQHDFAAPSASFESILSVLSSYFFVESDDGLLRWIRKTLRLKGLRERMKGW
RQEWQGFVRDGTSEGRVT