Protein Info for mRNA_4885 in Rhodosporidium toruloides IFO0880

Name: 13253
Annotation: K03105 SRP19 signal recognition particle subunit SRP19

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 PF01922: SRP19" amino acids 73 to 164 (92 residues), 100.8 bits, see alignment E=3.4e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (260 amino acids)

>mRNA_4885 K03105 SRP19 signal recognition particle subunit SRP19 (Rhodosporidium toruloides IFO0880)
MPTIEDYSDPEDMDLDLSSVPPPASSAAAKGKGPALPADLLGPEAGIPKALWVQPDASLG
RPPHNDWTRWDTLYPLYIDAKRPQQDGGRRVNAKLALQWPLAEQMAKACRALGFEAVFEP
SKTHPKDWENPGRVKVHLKSEDGKPRNPAIKNKRILLARICALLGPIQPHAPAPTEDNPH
PLPPIHLRLPANSPAISHGTLDQAMKGGGLGGMLGGMFGGGEDDEAIEKAKRDKEEEDRK
KREQMQKMLKPKKVHIKRRR