Protein Info for mRNA_4933 in Rhodosporidium toruloides IFO0880

Name: 13301
Annotation: K14972 PAXIP1, PTIP PAX-interacting protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1209 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF12738: PTCB-BRCT" amino acids 164 to 219 (56 residues), 41 bits, see alignment 3.1e-14 amino acids 504 to 565 (62 residues), 51.8 bits, see alignment 1.2e-17 PF16770: RTT107_BRCT_5" amino acids 990 to 1081 (92 residues), 66.4 bits, see alignment 3.6e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1209 amino acids)

>mRNA_4933 K14972 PAXIP1, PTIP PAX-interacting protein 1 (Rhodosporidium toruloides IFO0880)
MTAAASSSTAPAPALANADPALFKDVHFFVNDTLDPQVRAAIEDLLVDSGATPCRSDHPS
SSSSSSRLPRFDLSSITHFITDTLDFPERKLIEEVNAQEGGKTNVGLGIELDGVKGKGKD
AEGAEGQQIEIVTPAWVTRSYDLQILQSPRFYSADKALYFSGTVVCTSELPQADTLSIHA
GVLSLGGQVRRELTREVTHLICPAEHGAKYEMAIKFGTELGIVVVLPHWFTESLRLARLV
PVDIYRFPSPPFTTTLRDPSISSKPFADRLFDYWKNHLEPSSSSASKPPSPTPNTATHVI
LGTNRANQVCDGAARDEESYVRTMAEMEVAGRGGQPIAGVPPAHEDDPTLRPFANKRFYL
ASDLGLSVGLERALRARIAEGGGSCWSFAFDVEVSLDMPGAGEGGERSRRATTEGIDAWE
KRRHAEKRLKKSDIVITRTREGWEYWTAYDLGLSIANLNYLYHCISTSTLPSPLSRLLHY
PLPSLSGIPEWSSASTDGKKRDIIVTVSNYSGPARDYVRALIDCTGAKFEGSMTKSTDYV
ITPSEYGSKVQHARTWGLQLVTHLWLEALILEWRFIPPSTHSSYLLPLASPFGASSTNFA
AILGDTAYTREGIAKWAERDEVQQMRKEALRPLEELERLEREEERRRRAALAGEAGTLAQ
QGEKLAEEHESSDTDDDGASNGSREALEHVAQNLPTPPEQPRRPPVATAAPPKPPRQPST
LVGDTLDGHAGPVAGPSKQRSKTPQEPRPVPAKASPTVKQDAMDVDDGADGLVTPARPIK
PAKKKIAKEPTAAAKPVNGANGKKRQRSSSLSSATSTSSDDDDLPQSAKAMRKTFAQISD
ENLVVVGTKRGAAAKARQALAIVMEDRNAFEKELKSSGRKKKYGDALGGPSRKRSRSPTK
KATPDGDGSDEEEEDEPESSVLKAKVKAKRPPKEEDEEDELERPKKKPKVVNAANKPGSK
SAVKALQASAGASNTQDGVVSSFDKPPNGKPPQPISKTQKTKIISTGLGLDKSSDEIKAL
KSFGATWTDNPKDATHLVVKSISRTEKFLCCLPFVPKIVTIKWVEACLAAGKLVDEQSYL
LRDTKKEKEIGDTLEAILGRARKGKLFDGKTIYISRSTSPEPTTMQKIIEASGGVVHVKD
LSKFVKKIAENRDALVISCPNDRREWEKLAAAPNKKKIYSVEAALTAVLHQDLSRGFNDA
NRCDYQLEK