Protein Info for mRNA_4936 in Rhodosporidium toruloides IFO0880

Name: 13304
Annotation: HMMPfam-MFS_1 like family-PF12832

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 680 transmembrane" amino acids 164 to 187 (24 residues), see Phobius details amino acids 281 to 304 (24 residues), see Phobius details amino acids 317 to 338 (22 residues), see Phobius details amino acids 368 to 387 (20 residues), see Phobius details amino acids 422 to 447 (26 residues), see Phobius details amino acids 459 to 480 (22 residues), see Phobius details amino acids 487 to 504 (18 residues), see Phobius details amino acids 516 to 534 (19 residues), see Phobius details amino acids 570 to 589 (20 residues), see Phobius details amino acids 609 to 629 (21 residues), see Phobius details amino acids 656 to 677 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (680 amino acids)

>mRNA_4936 HMMPfam-MFS_1 like family-PF12832 (Rhodosporidium toruloides IFO0880)
MFTSFSQGADDPGSWDQSPAYAPGRFHAHVRPTSPPPLVPSSRNSSSHNLPLAFAPSSLP
NGRLQPHQPRTRPRPIERALHALSPDRRREAERARDGEERSLLGDWLSRSGVENGLGVEQ
RRAAFGDGAIAEEGGGAGAEDEEEDGGLLRPGRRRVEKWMSSWWRRWAVLVGAPCLIVWI
WCAVPFPVDNPYTEEPPWHIPWPGDPPSTTISTSVTSAVAAPISAPLALGAPSERRYGRE
VDARRPLLLEILNNGPMPINSHSSVVAPPADEPELPVDANWWFFLLYYYGVYLAIALIFV
TKLFDLFRVNWWPKSIGGSISYTFFWSLALLTGGLLHHFDLDGFGRRTRSKRPKDDGEEF
DWERKTTWVLLAFATMALPALACFAKLRADRRNSFRRSLTPAQKTFLERQLTQRMPRSYR
RFLWFLGTIALSLLALITGQAFATVYLSTLPHSAVDGLVYVWTWILTVNLLSSVSNWILL
RKVRSQALVFVFRLYFFLVYHVFYRNLFARLRSPDQAAWITLLSSSFVIVLYPISMSKTF
YRLLNATIGVDMEYAAYVANKGTELYLRNLSENVTMIGFLGWLSILHWGPNKVIYPYFAF
DTRYDPYTYRLTLTASLVIYATELFSNYLARAVCWLCYEIDVTNLGLDQFREHPELVIAC
VFTSCHVLSDMLLSVSLESS