Protein Info for mRNA_4937 in Rhodosporidium toruloides IFO0880

Name: 13305
Annotation: HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 PF00436: SSB" amino acids 25 to 121 (97 residues), 54.5 bits, see alignment E=5.3e-19

Best Hits

KEGG orthology group: None (inferred from 33% identity to uma:UM05058.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (143 amino acids)

>mRNA_4937 HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249 (Rhodosporidium toruloides IFO0880)
MFAAVRPAARAGVRAFSSTPRAADMAKITLIGRLGKLDHKQSKAGKPYVRYAIATSDPMS
KEARDADPNLKPTTSWHTVFAHGDAVERVSQVPIGSLVYVEANYQWRQSQNEAGENTYTM
LAQHERMRTIIRKKEDGEASNQN