Protein Info for mRNA_4943 in Rhodosporidium toruloides IFO0880

Name: 13311
Annotation: K13095 SF1 splicing factor 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 574 PF16275: SF1-HH" amino acids 146 to 249 (104 residues), 126.5 bits, see alignment E=9.9e-41 PF00013: KH_1" amino acids 275 to 344 (70 residues), 34.6 bits, see alignment E=2.1e-12 PF00098: zf-CCHC" amino acids 382 to 398 (17 residues), 22.1 bits, see alignment (E = 1.9e-08) amino acids 407 to 423 (17 residues), 25.8 bits, see alignment (E = 1.2e-09)

Best Hits

Predicted SEED Role

"Single-stranded DNA-binding protein" in subsystem DNA repair, bacterial or DNA repair, bacterial RecFOR pathway or pVir Plasmid of Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (574 amino acids)

>mRNA_4943 K13095 SF1 splicing factor 1 (Rhodosporidium toruloides IFO0880)
MYRSNAQRTGTNDVPLPSMRRWGGGGGSDGPPPGGPPPPRDSYGGGYGGGYGRDDRGPPP
RDSYGGGYGDRDSRGGYDSRGGGGGGYGGGGGYDDRGRPSSRFDDRSSGGYDDRGRGPPP
PPPSAGLPPPPPPPGADSPAPGERKRKSRWGDKSDATVPVAITGGVQEKDLETYAVQLRL
DEIQRALRTGQVVPPDGARSPSPPPTYDSHGRRTNTREVRYRKRLEDERMRLIDRQIKLD
PNFRPPAEYLVAKRQNMGRPQEKIYIPVKEFPEINFFGLLVGPRGNSLKKMERESGARIS
IRGKGSVKEGKGRPGREDDENDELHCLITGDSEEKVQACVKLINSVIETAASVPEGQNDH
KRNQLRELAALNGTLRDDENQICQNCGGVGHRKYDCPEQKNWSANIICRICGGAGHMARD
CTQRPGRPGFGAPPGFGSPAPAGPPMAQQFDSEYAKLMAELGETDTAPPIAATGPPGPAG
ATGGPVGAAAMQQTQPVDANGNKIPPWRIPENWHPPSGMNRGPPPRQPPPPPAPYGGPPQ
GNGYNAYPQAGYGGAAGYGGYPPQQPAGYGGGGY