Protein Info for mRNA_4951 in Rhodosporidium toruloides IFO0880

Name: 13319
Annotation: K15114 ORT1 mitochondrial ornithine carrier protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 transmembrane" amino acids 80 to 99 (20 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details amino acids 222 to 238 (17 residues), see Phobius details amino acids 264 to 279 (16 residues), see Phobius details PF00153: Mito_carr" amino acids 19 to 107 (89 residues), 72.3 bits, see alignment E=1.3e-24 amino acids 131 to 240 (110 residues), 48.4 bits, see alignment E=3.8e-17 amino acids 259 to 345 (87 residues), 52.8 bits, see alignment E=1.6e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (346 amino acids)

>mRNA_4951 K15114 ORT1 mitochondrial ornithine carrier protein (Rhodosporidium toruloides IFO0880)
MGDRQELPPHGEPVREWSSLKDILYGSAAGIVSKLFEHPFDLTKVRLQSQPLDRPLRFTG
PWDCIVQTYKNEGVPAFWRGVSMPVVGAMAENATLFVVYNQSQTLLRRLFPPPPRLDPNS
PAPLNIPLIATAAAIAGAATSFVLTPIELIKCKMQVSNIAAEGLAPAPAALAAAGINTTV
TAPSSPAEAPGSIAVTRSVLREYGFRGLWLGQTGTLIRETGGGAAWFGTFELLAAYFVKR
RADRGERSATGGHVSKGDLSALELMGAGATAGVVFNVVLFPADCIKSTLQTEDELRGKEA
SRNQPRRSFLQVGKDIYRARGIKGLYSGCGLTALKAAPSSALIFYM