Protein Info for mRNA_4978 in Rhodosporidium toruloides IFO0880

Name: 13346
Annotation: K12883 NCBP2, CBP20 nuclear cap-binding protein subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 PF00076: RRM_1" amino acids 37 to 106 (70 residues), 52.5 bits, see alignment E=1.8e-18

Best Hits

KEGG orthology group: K12883, nuclear cap-binding protein subunit 2 (inferred from 55% identity to uma:UM04861.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (197 amino acids)

>mRNA_4978 K12883 NCBP2, CBP20 nuclear cap-binding protein subunit 2 (Rhodosporidium toruloides IFO0880)
MATVTISSLSSYSSYRDSRSPLPIEVQHANLAVSSTVYVGNLSFYTTEEQIYELFSRVGE
VKRIIMGLDRHQKTPCGFCFVEFFHHSHAVASLRYISGTKLDERIIRADLDPGYTENRQY
GRGRSGGQVRDEYREDWDPGRGGWGHLKNREEVEAQRRREVEETYRDDHDAGGAGREVPT
GAGDPDENPRFREEKDE