Protein Info for mRNA_4979 in Rhodosporidium toruloides IFO0880

Name: 13347
Annotation: K03575 mutY A/G-specific adenine glycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 666 PF00730: HhH-GPD" amino acids 133 to 259 (127 residues), 69.2 bits, see alignment E=5.9e-23 PF10576: EndIII_4Fe-2S" amino acids 312 to 328 (17 residues), 21 bits, see alignment (E = 5e-08)

Best Hits

Predicted SEED Role

"A/G-specific adenine glycosylase (EC 3.2.2.-)" in subsystem DNA repair, bacterial (EC 3.2.2.-)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.2.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (666 amino acids)

>mRNA_4979 K03575 mutY A/G-specific adenine glycosylase (Rhodosporidium toruloides IFO0880)
MPPKKKSAAVARPPLPAPNATHPCASLIPSALDPASLIERPHPASYHAFLTSPYYPTASP
SSEPPTKKRKKESSEPKLPPALDTAIEAVVVQKKLLAWFDGVKEKRGMPWRKEVDPKTLS
QKERTQRGYEVWVSEIMLQQTQVATVIPYWKKWMEKFPTVKALAKADIEEVNEVWKGLGY
YSRAKRLLDGAKTVMEKHDGVLPETAEGLLDIDGIGPYSAGSISSIAFAQRSPMVDGNVT
RVLSRLTAFHAPAAAKATTSYIWALADVLVPPQPKKKKASTEGGDSSTLEVGGLNKPGAW
NQGLMELGATMCTPKNPNCAECPLNDECLAYAEARHVAHRPVANGSASTPPDIEDLCTLC
APLPYEDASEARRHSVEVYPMAKEKTKKRDEETAVCVLEWVPSGAEEKSDEDRKVLLIKR
PEKGLLAGLYEFSAVDLPASTAPSTSKARSKYLDKLLHTLLDIPSSTTFSPSSSEDADSS
DLRILSRSTLPPVTHVYSHMNRTYHSERLVISSPSLPVLRKSSSASPAKKDDMVQSLPGR
GKWADAADVEGENVGGAVGKVWEERQLQAKGLASKNGAKGKGRAKTGEGGKKGKVEKGQG
SLAGFFTKKEERVKEMVEEEDELIVVEEKREVKVGTNGGTAETVVEQETKIYKKRRIAPA
SDDEEE