Protein Info for mRNA_5000 in Rhodosporidium toruloides IFO0880

Name: 13368
Annotation: K16302 CNNM metal transporter CNNM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 529 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 62 to 88 (27 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 180 to 200 (21 residues), see Phobius details PF01595: DUF21" amino acids 70 to 235 (166 residues), 111.9 bits, see alignment E=2.9e-36

Best Hits

Predicted SEED Role

"Magnesium and cobalt efflux protein CorC" in subsystem Copper homeostasis: copper tolerance or Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (529 amino acids)

>mRNA_5000 K16302 CNNM metal transporter CNNM (Rhodosporidium toruloides IFO0880)
MAGCRRMPTRSAGLLQLALLVPRAVRTYAAPAAAIVLGAGYEGMGASLPGGEPPETEPGS
SAFWWKLALSAVLVLLGGVFAGLTLGLMGLDLVNLQVLSTSGDEEERKDATKVMKLLEKG
RHWVLVVLLLSNVVVNESLPIFLDSILGGGLGAIALSTTLIVIFGEVIPQSVCARYGLRI
GAKAAPFVLALMYLEFPIAYPIAKLLDRLLGEEQGVTYKKAELKTFVGLHKQFGEETLND
DEVTIISSVLELGDKSVSDIMTPLEDIFSLPSDTKLDHTMVDHILASGHSRIPVHLPGNP
TDFIGMLIVKKLISYDPEDEKQIGDFALSVLPETGPDSTCLDVLNYFQQGRSHILLVSTT
PGEAGGALGLVSLEDVIEEMIGEEIVDETDLYIDIHAKTKVVRAPARKPALGNGKLAPLI
AGVIERRRQARRHNTAEFLGPNGVPDSNFSTEGRNTPMPGAAPSGFDKVKLRGGGVPERR
IASGSGANTPVRGHSRLRTENLAVKGSNGGNGERTPLLQNGGQESRSLE