Protein Info for mRNA_5004 in Rhodosporidium toruloides IFO0880

Name: 13372
Annotation: K12848 SNU23 U4/U6.U5 tri-snRNP component SNU23

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 226 PF12171: zf-C2H2_jaz" amino acids 102 to 126 (25 residues), 27.2 bits, see alignment (E = 3.9e-10) PF12874: zf-met" amino acids 102 to 126 (25 residues), 24.6 bits, see alignment (E = 2.6e-09)

Best Hits

KEGG orthology group: K12848, U4/U6.U5 tri-snRNP component SNU23 (inferred from 52% identity to ppl:POSPLDRAFT_89335)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (226 amino acids)

>mRNA_5004 K12848 SNU23 U4/U6.U5 tri-snRNP component SNU23 (Rhodosporidium toruloides IFO0880)
MSSGKVGAYGANSKSDTNFRRTWDQKEYEEKAREKDKEAHEAALAAEEAAKKGKRPPRKK
EDLPKATEFMKARDVPLNLDKNLNKTIVIDASAGSGQKQPGFYCDVCKRTCKDSARYLDH
INGRSHLRRLGQTTKVVSSTLNDVRQKIAELRAKSAAAAQAKKYDFEQRIKDIKAAEAAS
KAEQREAKKRKKEEERLKAEEARTAGADEDMMAAMGFGSFGGGAKR