Protein Info for mRNA_5016 in Rhodosporidium toruloides IFO0880

Name: 13384
Annotation: BLAST UPF0643 protein PB2B2.08 [Hypsizygus marmoreus]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 signal peptide" amino acids 1 to 14 (14 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>mRNA_5016 BLAST UPF0643 protein PB2B2.08 [Hypsizygus marmoreus] (Rhodosporidium toruloides IFO0880)
MATAALLQHASSALPHTRDRDRSTSRLGRTGRPAHRNIQIQPTLRTINEIIQALRERPLP
DLSSAQRVTAVEPLLYLPPILSLLPPSLVEDSPSPSTSSVVQYTNSRLPSIDPVTLAFHR
ALHAFRPLTPLYAVVPYAEAFNWSEITLEDDEEGTAREAEREWYVVAFRSRRRRGLSEEE
AERLYRADRAAHEEAVARKILMYWLGAPFPSASEQDGAPIDDDLVGVNLATCIWNSRQDA
IVAMRGEKHREAAKLASVSPPIGSPPLAGRWLPMEIQTTYETYQLERYIIRKEKGELGIS
VRDWHGGEVVGAS