Protein Info for mRNA_5019 in Rhodosporidium toruloides IFO0880

Name: 13387
Annotation: HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 876 PF07716: bZIP_2" amino acids 411 to 461 (51 residues), 24.1 bits, see alignment 3.2e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (876 amino acids)

>mRNA_5019 HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 (Rhodosporidium toruloides IFO0880)
MSSSLGDLSGLQGMLAQLTGNNAQADPLVVQPGDTDTQGMSFAELFRCVQCGHPLSQLTP
HLEGARTALASQRTALGGGSGQDTGGDGMDGLACTSPDERCVVAIALAYPRGRASGPGGH
FAWRSQEPASHAAVLTRLEIAACSHYLAPEVAKLPPSSSSAPTTDLASPFVFGGVSSAPS
TSTAGSTSGDVFSPLSASTSFDPSTFMPTIPGSPFSHSSDGNSGHSPFSLADLDFSSTTV
GGGAADGFAIDPSVFGPPAETNAFDPMLALPTAAVLPPLPALPIAPVEPVEQPQQQPQQL
TASGRPKRNVAHTVIEEEDEDDLYSSDGSVATTSGSRKARRTSRKPFPAKKARSNLASSE
EPPSTGSRKQAARSVAQLASATLHKTSANSHLPPVPQWADKPDPEEYSKLSSKEKRQLRN
KLSARNFRHRRKEYITTLEEQIHDRDTIIATLRDEVGVMRAENSGLKTEVATLKEKWQDL
LDKLSSLSAPPSTAAAGLGTNPSRAVASAAAGAAVVKQEEDIESIPAAGPSTRRIGTRAA
VSSTNALQLPNFSKDVSAHARRSTGVWSTASPGLGGGFMSVHTTLIPDVAPLADGVAPKL
PAASPFSNQSFNPALNALSQNQIADLPALTSHLRTGFSAAQQQQPQQSTPAQQTPKGTFE
DFFASNPFWLRPDQLEQNRAALYGKLANNAAGLFAAQKEQQQQPQQQDDAYLPVPQGFKP
AFFRSPKLSPSTSATTSELLAYQSPAAFSSPPPLSHQDALALREQAMSASVAHLASQTLM
QKMMASFWDAFSGSPASSGLSADKVKAVLGGKARVEVVPVSAPASPKTAPASIDALGAQM
GGLRLEASSSDEGSSSSCSFTQQVLGRRCVMNEKRA