Protein Info for mRNA_5027 in Rhodosporidium toruloides IFO0880

Name: 13395
Annotation: HMMPfam-Cryptococcal mannosyltransferase 1-PF11735

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 628 transmembrane" amino acids 104 to 129 (26 residues), see Phobius details PF11735: CAP59_mtransfer" amino acids 239 to 517 (279 residues), 215.3 bits, see alignment E=5.4e-68

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (628 amino acids)

>mRNA_5027 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 (Rhodosporidium toruloides IFO0880)
MPALFRTASPSPRSPPPSSTRDSLDSQADTAETPLLPRWNTAKHSKDWEDSADEGRERSF
LRPAGNGRTRADGRPYSHALDLPSSPRSYNATLRSHRRQARLVGLLYSSAWVCFAGTCLI
GAGVLGWVGHFLWMRHAAYATAVFEKPMLPKPVEVEGRVEAFSADLRRNGTEREEESVGP
LAWRLKAIEDELQARFDGMGLPGMTSLPCAGISVNDTSLTSRYSALRRTGPSEPRQGKTL
LALNLYNSEDVLPTLSHALLTVTSFLDPSTVHVSIFENGSTDKTTLALAHLAAALTALGA
SHTILSDPRKTNWKAVDRIAQLSVYRNVLLSPLSDSPNSFSDIVFINDVYTCPSDVVELL
FQRKAQEADAACAMDWRPNGGIARKWNGSVKFYDNWVSRSLSGETLRARADILSEWRNGV
EEIFDQPGEERWKERWNRGLPVPVYSCWNGMLALDATPFTSTTISPRYDPSSPLPLSSRK
SWRRPPPLTVSTPARFRSALKSPGECAASECKTLAKDFWTRGFDRWLIVPSVRTTYDHDT
YFHPQLRRLSSLSPPSSSQLTIPSPLSPPTPSASDDALDPSERIPWSDLSPPDSVVCYGW
VRGFHVDLEWLRATWERPYSFIRTIIQR