Protein Info for mRNA_5030 in Rhodosporidium toruloides IFO0880

Name: 13398
Annotation: K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 TIGR00469: phenylalanine--tRNA ligase" amino acids 72 to 482 (411 residues), 497.3 bits, see alignment E=1.8e-153 PF01409: tRNA-synt_2d" amino acids 100 to 210 (111 residues), 60.6 bits, see alignment E=1.8e-20 amino acids 267 to 375 (109 residues), 90.4 bits, see alignment E=1.3e-29 PF03147: FDX-ACB" amino acids 387 to 484 (98 residues), 90.8 bits, see alignment E=6.3e-30

Best Hits

KEGG orthology group: K01889, phenylalanyl-tRNA synthetase alpha chain [EC: 6.1.1.20] (inferred from 59% identity to scm:SCHCODRAFT_74114)

Predicted SEED Role

"Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20), mitochondrial" (EC 6.1.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.20

Use Curated BLAST to search for 6.1.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (484 amino acids)

>mRNA_5030 K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain (Rhodosporidium toruloides IFO0880)
MLAPRLAGAQAAQQSLKCTCRAAYTTRAALARPGPISLTSSPLPRFDAPSARPTPRSFAR
SYSARTTPTDPIVVEGKTYPRDAFSNVTPTILSKLPRRLHLSPSHPIGILRTLIESHFAS
FKHLNSLSPIVTVQQNFDDLGFPADHPGRALTDSYYLNQTHMLRTHTSAHEVESFRSGLE
QFLLTADVYRRDEIDRSHYPVFHQMEGCSVFDPSTGAIERLEKENAEMRAALKAANIVIE
DETGEETATNPYQAEHDPRVARMIAEHLKNNLNGLVLKLFGGRASQGGEPLRVRWIEATF
PWTAPSYEVEVMFNGKWLEILGCGVVRQTALERSGVGHKQGWAFGLGLERIAMVLFSIPD
IRLFWSEDARFLSQFREGEISTFKPYSKYPECYKDITFWVPTKEEGVKEWHENDFMELVR
DEGGDLVESVQLIDEFTHPKTGRKSRCYRLNYRSMDRSLSNEEVNRIQDRVIERVTGEMG
VEVR