Protein Info for mRNA_5041 in Rhodosporidium toruloides IFO0880

Name: 13409
Annotation: K01077 E3.1.3.1, phoA, phoB alkaline phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 635 transmembrane" amino acids 87 to 109 (23 residues), see Phobius details PF00245: Alk_phosphatase" amino acids 184 to 590 (407 residues), 304.8 bits, see alignment E=5.4e-95

Best Hits

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (635 amino acids)

>mRNA_5041 K01077 E3.1.3.1, phoA, phoB alkaline phosphatase (Rhodosporidium toruloides IFO0880)
MNGSVSPKQFVLDEETHSSSSDTASLIDRRGTEHDAGADEPVRYPPGVLSEEEKALPRRQ
NHLAVRIPTRQEVLDARTRPKQRPRRLGIVVPGLLALLGFAFLSTWVLSLGTQFGDQHRI
QVILMISDGMGPASETMARSFVQYLASTNSSSSNFKRSLLNESSWTDLEDSYRGKGSMGG
MLPLDEILVGSSRTRSSNSLITDSAAGATAFSCGVKTYNGAIGVTPSLQPCGTVLEAAKR
QGYMTGLVATSRITHATPASFYAHVPDRDLESEIAEFLVGEDGSALKGLRVDFAFGGGKC
FFLPNGTDGSCRTDGKDMLGAAKAKGVRVVDGMTALRAYKDEDSVDEPVLGLFASDHMEY
EADRQRITALADEQPSLKEMATHALRYLSRKAKDNKGFFLMIEGSRIDMAAHNNDPVGHL
SDMLAYQQTVQYVKEWVDAQNEQGTPTMLISVSDHETGGLALGRQLGEAYPEYLWYPDAL
VNATHSSSYLGSLFASRYPAATRDWVISELFEKGLGIVDAAEWEVDAVWKMRQDAYGANR
ALADAISRRAQLGWSTAGHSGVDVNLYAYGYNSTGLTGNVENTDIGLHIAENMRLNLDVV
TIELGKGQSSWFDAKAGNETTRTRTTGLGHYHGDF