Protein Info for mRNA_5042 in Rhodosporidium toruloides IFO0880

Name: 13410
Annotation: K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1143 transmembrane" amino acids 212 to 227 (16 residues), see Phobius details amino acids 277 to 294 (18 residues), see Phobius details amino acids 932 to 953 (22 residues), see Phobius details PF03098: An_peroxidase" amino acids 154 to 234 (81 residues), 29.9 bits, see alignment 2.5e-11 amino acids 237 to 414 (178 residues), 51.3 bits, see alignment E=8e-18 amino acids 511 to 607 (97 residues), 44.1 bits, see alignment E=1.2e-15 PF00067: p450" amino acids 986 to 1047 (62 residues), 31 bits, see alignment 1.2e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1143 amino acids)

>mRNA_5042 K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2 (Rhodosporidium toruloides IFO0880)
MVNPPTAPSHWGRQQEDVAHPSPPQKGLVGSLIDNVKTVAGTTLHIAQLALSETKPVQAA
QSTLEQGEHALHSLFEQIKDNTLARDALTILRAGVQSVKPLDDRKLLLEQIIVLLSTLPP
DSPVGPVLQNAFIRVLWMDIPKPPATLIGPYQHRTADGSGNNVFSLDVGKANMPYARTVP
PIHPVPRNLPDVDLVWETLLKQDKFTPHPSGISPLLFSFAVLITHSIFQTNHDEPAYNET
SSYLDLAPIYGNNEAEQKQVRLGENGLLHADTIASRRLFLMTPAAVALAIVFARNHNWIA
KKLFEVNENDVYQPWDQLDEDGKAKQDEDIFQKARMINCGHFVAVIFQDYIRAILAINRT
TSTWSLVPTGEIKDAFQGPLPRGTGNHVSAEFNILYRWHMAMSKEDAAWLERLMHKHSKV
KPENMTPDDFRAAYESVAAELGDNPRRWTFNNLKRTGPDGEGPFRDDDIVKTLTDGTIWK
AGAFKARGIPDIFAVIDKMGMVAARNTWQVASLNEFRRMLGLKEYTDFSEWNPDKDIAET
ARRLYKHVDNLELYPGLMAEQPKPSREGSGLAPGYTISRAILSDAAALVRGDRFLTHDYN
VATLTSYHFQDLQPDLDNGAFGGHICKLLFRLFPGHYTYDSVYALFPFTNPDTTRGILEK
LNIEDRYSFTKPSHAPHWVKVTTYDGARHVLNRPASFDNVYGPALAEVSGKEEESLLTMF
KNATEGPSQQTFSETLDAVFFPSNFAQLALTRIGDMTKQQMEWCSWKYGKGEHLRVDVVG
DVFVPVVSQYIADICGVPLKTKHNALGLWTPTQFFEVLSEIYSFVYLNFDPSVGFKLRDR
VIKNARTIRLIIEGRLMQASGFIVRSPRSFFLLSTRSPFRPSLPQGQLGELVGDIKNLIM
PSRGQGFVMSDTAREFYHRVIRSTDRPAAELAGVILIGAVRLVTCVSQAANVLDFYLKPE
QEKNLKKVLQAAQRHTNIADDATLLHYVEEALRLQPAVYGTARRAKGDMHIKDGDKDHHV
KKGQHVWVDIVSANLDAEHFPKPNEVHENRDITGYTFNQKVSSLTNTRNESLNSTLVTGL
IREAAQRDIKRAEGAAGQLGRINAADDFCPAYVRAEGPPTAFPSSMDVIFTGKKNVVYGG
YEK