Protein Info for mRNA_5055 in Rhodosporidium toruloides IFO0880

Name: 13423
Annotation: KOG1289 Amino acid transporters

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 534 transmembrane" amino acids 53 to 74 (22 residues), see Phobius details amino acids 84 to 108 (25 residues), see Phobius details amino acids 136 to 165 (30 residues), see Phobius details amino acids 172 to 194 (23 residues), see Phobius details amino acids 200 to 218 (19 residues), see Phobius details amino acids 280 to 304 (25 residues), see Phobius details amino acids 335 to 355 (21 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details amino acids 414 to 433 (20 residues), see Phobius details amino acids 454 to 475 (22 residues), see Phobius details amino acids 483 to 503 (21 residues), see Phobius details PF13520: AA_permease_2" amino acids 51 to 492 (442 residues), 186.2 bits, see alignment E=9.8e-59 PF00324: AA_permease" amino acids 62 to 505 (444 residues), 79.6 bits, see alignment E=2e-26

Best Hits

KEGG orthology group: None (inferred from 58% identity to ssl:SS1G_01062)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (534 amino acids)

>mRNA_5055 KOG1289 Amino acid transporters (Rhodosporidium toruloides IFO0880)
MDPSSPPSLAKHLSPSTAEAQQHPHGYVDDADRLAQLGYEQELTRGWSALESFGISFSII
SICTGITTSFSLGLTNGGPGVMSIGWICVSFMTMFVALSMAEVVSAIPSAAGPYAWSSVL
AREKWSPFAAYCTGWFNFLGQAGVTTAIVFGNATFIATVAALRGFVITAPRVIGIHAALL
IFAGLVNTVGIRFLGHLNRFSILIHSVGVFSICVALLAKAPTHQTAREVFATYHDESGWG
ERASPAYVALTGILLAQFTITGFDASAHMAEETKDAGRAAPIGVIMSVGVSTVFGFFYLV
SLLFSMQGYDSTVVPATGQPVLQIFVDVFGQNGGTAAASIIIACITLCGTFSVTSNSRMF
YAFSRDRALFGWFDHVDKRTQVPVRTVWLAVLLAFCLALPSLGSIVAYTAITSIATIGLY
ISYVLPIAIGLAFDQHRFRAIRGPFHLGAFSRPCAIIATGYVIFITVVFCLPTISPVNSQ
TLNYAPVAVGIVFLYIIISWFGWARHWFHGPRQGASRSFFTFLHLSLLRFRHHR