Protein Info for mRNA_5076 in Rhodosporidium toruloides IFO0880

Name: 13444
Annotation: K00588 E2.1.1.104 caffeoyl-CoA O-methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 90 to 110 (21 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 219 to 240 (22 residues), see Phobius details PF01596: Methyltransf_3" amino acids 84 to 220 (137 residues), 99.1 bits, see alignment E=2.1e-32 PF13578: Methyltransf_24" amino acids 119 to 221 (103 residues), 31 bits, see alignment E=4.4e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>mRNA_5076 K00588 E2.1.1.104 caffeoyl-CoA O-methyltransferase (Rhodosporidium toruloides IFO0880)
MAPSNPLLVPGLLPARAPTLLSTALSHLSPSSPAHAPLLEAHTLTAQLEPYAEKYSSSLI
VPRGHGVEEMLRKTEETDWVGLKERGETRYQLGAVMCSGAYEAVVLQTFAAMMRAEKVLE
IGVFTGTATLALALVPCVKQVIALDIEPYLSTFNEPFWTRAGVSHKIDFRVAPALETLDK
LKNEGYEGFDLVFIDADKEGYREYVRKVVEEGLLKEDGVILAVCPPFSLLFTRALILMLH
RFAHWQDNTMYKGLAWAPPAPLPEDEFTVPADVLARRKFEADNTKGVHEFNEYVRNHPDL
QVAMLPIRDGITVIRRRM