Protein Info for mRNA_5102 in Rhodosporidium toruloides IFO0880

Name: 13470
Annotation: KOG0619 FOG Leucine rich repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1338 PF13855: LRR_8" amino acids 418 to 475 (58 residues), 32.4 bits, see alignment (E = 9.5e-12) PF10428: SOG2" amino acids 802 to 1292 (491 residues), 345 bits, see alignment E=1.7e-106

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1338 amino acids)

>mRNA_5102 KOG0619 FOG Leucine rich repeat (Rhodosporidium toruloides IFO0880)
MPSRHASQTSVSSVASDNSLGFLGPHDSMIPTDEGAFGALRRELSATEPLNGLGVSEEDR
PPPGSSSRPGRFYDEPEQVDTLRGRPSYEIGRPDADQDVETLGRPASIEVDGSMSFLLSP
PPAALDLATPNSQAKAKDRRPGDRSFPAPLLLKSDRSYSSGGGNANAATSPYFPPTAPLS
IPRRPSASTSIGGSSSTSVSPAGPPGRDWSRREGTGQSSSSGESSRSTLPYQRHRHQQSS
TSSLSHGSYLPYNSSYSYEPRQLAPSSSSTPPSSSSSRPGTQPSQPSENASSAPPPPFST
SSTTPPGTSSEPPISSQALLLHVLALRSAASPMALSQSQGPLSRSGTPLAAGAPSHQRIR
SAGSTAADSDATTAPAEDRNAARQSTYHGGPKLDTVDLSHKRIAEVPLEVVEELKDEVEK
LALGYNLLKDLPPHFGELGNRLKYLNIRVNLLTTFPAVLCSMPSIEILDISRNKIRKLPA
NPGTLVNLKVLSIAKNRIKRLPVWFTTMSHLKVLKLDHNPLEWPPRDVATFSPSIAGQPM
SKQEEADEMQRWLPALMTWMRDHQDSDEDERQSSEGRIPRTTRLPTSGSGHMPQNSLTAI
LEPVAPLRLPSTSPSSSNARLAPDLLEADPSARHSRNASHSTAQSGNLTPLSSLRAKKSL
PDLRQSHADILAERRTGPGLDAGAEPALPNLDNLPRGLLDGHVHPPIARSLSARPSTASD
DRDVSTSSDSTATPARPNPIMRSESARPMARSVADPALARRQATLAPGRLVLQVEADSAG
RVKRAEVSRPTPAESERSSGAYFRRMSMLPVSTISKTVPVALLQFADAIRGILFSLSQVF
SALRQFVVFAAQDRLPPPIARIMSVADTTMTALINALDRFDSVSRRGTPPALIIRDVFSS
CRNSVAAFGELVTAIQPQLASLTVSADLRYTRTLLLMLYGAVGEVANSWSAVAPLITDID
DPSLATLVLQPPTPSPTIEPSAQIEPGPRLTRQRSVTRRHAGSFSVEDVQLGANLPPADI
PPVPSLPGGPLVLDEGASANEASGGSTLRARPPMSAKSSTSSTGSFSTSRAAPPPPLAMP
PQLGYEAMAQKAFEHPITPGGMGLFDRAGDSRALSRQNSFSASVPPVPAIPTGAGSAMPA
SYHPHRVSRPVSTLNADETFVDQADSTISIASDVYGMLLDSFEDPAMSEQFADIDSRRMD
ELVDLCKAGHETTQRLRRAVERVRGNDGRGRLKFTTSDARKLGDASFDFVQNVIRSAKLI
KSISQDFPFPLQMREAVGQLTLGTREFARLLSHAQTSFRPSQVVAREEKAAGSANGGAGR
DAGSLDAKAAGGGPAGRV