Protein Info for mRNA_5106 in Rhodosporidium toruloides IFO0880

Name: 13474
Annotation: K12819 SLU7 pre-mRNA-processing factor SLU7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 PF11708: Slu7" amino acids 151 to 434 (284 residues), 354.3 bits, see alignment E=3e-110

Best Hits

KEGG orthology group: K12819, pre-mRNA-processing factor SLU7 (inferred from 58% identity to cci:CC1G_04532)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (575 amino acids)

>mRNA_5106 K12819 SLU7 pre-mRNA-processing factor SLU7 (Rhodosporidium toruloides IFO0880)
MSGKLSREEYRRQKDLEAARKAGTAAPALDEEGKPINPHIPAFMANAPWYLKGETSTDGP
SLKHHKLGLPEYNKDPGKLASRFERGAKAGPAAKKYRAGACTNCGAMTHSAKDCLERPRK
VGAKYTNKNIAADEVIHDSAAHLNGLQGQGDYDAKRDRWDGYDPSMHKQVVEEYEALEAA
RRKLREEAIDRGTAEASSKEVTKLAKKGKAKGKGKGKGKEADESDEFGSSDESDEDGADD
DEDKYAEGADVAGQKLDTKTRVTVRNLRIREDTAKYLMNLDVDSAYYDPKTRSMREAPNP
ALQPEDASFAGENFVRHSGGATELQKLQMFAWQSENRGHDVHIQSNPTAAALMHKEFLQQ
KEVLKDKSSASILDKYGGEQYLQAVPKELRVGQTENYVEYDRRGKVIKGMERAKAKSKYD
EDIYPGNHQSIWGSWYQLSTGKWGYACCHSTIKGSYCAGQAGIEAADAEANPSSTILAHP
SSSSASADKDAGKSLMQLKQERDDEERKKRKADSSASTGEERGKKARKEGEKEGEKGEKD
FTGVTEAEMERYRRDREQRFDDPMAQLQGDELLPL