Protein Info for mRNA_5107 in Rhodosporidium toruloides IFO0880

Name: 13475
Annotation: K03130 TAF5 transcription initiation factor TFIID subunit 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1967 PF04494: TFIID_NTD2" amino acids 120 to 232 (113 residues), 88 bits, see alignment 1.3e-28 PF00400: WD40" amino acids 547 to 588 (42 residues), 15.8 bits, see alignment (E = 4.2e-06) amino acids 594 to 629 (36 residues), 23 bits, see alignment (E = 2.3e-08) amino acids 637 to 672 (36 residues), 40.7 bits, see alignment (E = 6e-14) amino acids 676 to 714 (39 residues), 27.5 bits, see alignment (E = 8.9e-10) amino acids 721 to 756 (36 residues), 24.1 bits, see alignment (E = 1e-08)

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1967 amino acids)

>mRNA_5107 K03130 TAF5 transcription initiation factor TFIID subunit 5 (Rhodosporidium toruloides IFO0880)
MSTPQPPTQSGQQQQGGGGGGNPDASYRAILDYLAKRGHHKAALALQADLEGAAGGAGGS
RPASPATAAAGGGRAVGLDDFTERNAPSAPRAGSAGAAGQQGQQRRRMDQSVAPGQMLVD
PPSWEKGYEGIRAFVENSLDIHRPELEPILLPLFVHSYLDLVQIGCRDAADHFLNRFAPD
HAPLYPSLIRLLASLRLPSHVDEDPSSHRWRHEPYHVRMSERGWGLLLGWLQGGGAGGGG
VVAEGTEGRGRDRVLAIINERIKIDAIPGPPLRTSLASHGLETDYHPLLHSAHPHPSTGA
PDTGTDSLKLGPAPRNPALEREVKRKLRDEGDDEADSKEGKKADEMAVDLGAAGAEGAEG
EGSKAVATTDADEHAGKKATSTTEDLVSPFPAELPPYPAVFRTLDVQREVSLVREARKRI
KLGGEAYAPEGALVPTNTGGAGAALGAALIGGEDGKKGEREDKRRGVAKPSVCLFTVHDA
GESLTTVSFSEDSTMMATGFSESYIRLWSLNGKGLRALRTDLKSEEVGKIHDANGLGKLY
NPEAPQTRKLIAHSGPIYSLSFDPVPGPSQPPRYLLSASADCTVRLWSLETFTNLVVYRG
HREPVWAVEWGPRGVYFATASRDKTARLWITDKVNAVRIFAGHLSDVNCLAFHPNSLYLA
TGSSDRTCRLWDVQKGHCVRVFVGHRSSVQLVKISPDGRYLASASDDGLIILWSLASGAR
VKTFWGHQAPINSLSFSMESTVLVSGASDETVRVWDVATPPAEEDGGDASGGLAGAKLGG
VGGAGGAKGRFPGLVGAGAEGKRRASAVAGMGGGKDGKDGEVGKKGDGLGLIPRATAGEG
TCPDLLTTLATKRTPLLEVKFTPRNLCLAAGAMREASTGSASNSRPSPRGPTLPSRLDTA
LVLLSSPAERAAVGSRTTAEARECTHQASVLVRSFITPLNYLQSSPDTRSRRRQSPCSPP
PPRRSIPTLPKPAPAPFACSTACEAHTDAGSRIRDAGEDRTDAAKGRRLVSSDVRPLLSI
SLEAFVPARDEPRMSSPPAPAPLTDSPTSSDSDSPPAPPKLSPDVVASLQLDLSWLDLRT
PPSLPSSSKATSTSASDSGRATPLATLAARRITTQLQRPPLPRRRSKSLDDVKSHASSSG
ASTPDEWRREMGMNGYSGGEEASESSSVLRLDMAALQRAKGGLEVPPSATSASSRTASVA
RSVVASTVVGNGADQVSQPTRRRRSKAEDEAEEDRLAEWVRRTSSSSASSAGSAAAPVAA
APSPRLGTPGKVALPPRQPYAPVLPSPLSTCSYTSEDDAREEDDGFPFPSTPHPSTSTPT
TASTTQSESSSPAAEAKPPTATPRKSPQLKRRPSNAARPSYHSYPSASTVTSSTATAVST
PAGPPGPPSASSSPSSALNPRSHTRGTSVSSSSQRPPLTPPESLSISPHLYAASAAELAW
HDVLNARFGALAVSDLRFPQTGGMSFTGGSGSTGAGRAEGRNGGNATTPDQDSGRRGGWC
GNELMGNAAAGGFATSTKEHLAGMLEEFVGMVPLGEGEETLHIVEYGALNSRSAGLVPPV
IAHFANRELHSNTSVASSGDPDELLNFQVTHVDKPTADFRCLTEALDTRPDSYLRKQVDL
SDVDLDGRVFSTFAARPSGVKVLPKKTVSVGFSAMSLHWPATDRKFRVAPATLAHGELMA
FLSARASEFKPGGLLTLAYIARSEEAALASSSPQTSSPGAGASNSVPESPVGSPPSHRPL
LEQRRSSEPHIFASLDNAPSAAAPAQPTSSVPVQTATKRKDIWAHLTGILGKAIQRLVST
NLLKPQIARQLLALPLHPRTPRQTNACLRASAHSWDTLKTEIVTISHPAWKGVEHGTVSV
ESWADYTIQLLKIFWEDEMRGILREVLGSRSACEWTLESLWTFAKEKVEEQPPHPLELEV
QLIALRRRNRPPSVPTSPIGGQAPALPGKISIEQEAARPASRVDVMA