Protein Info for mRNA_5137 in Rhodosporidium toruloides IFO0880

Name: 13505
Annotation: K13342 PEX5, PXR1 peroxin-5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 891 PF13181: TPR_8" amino acids 611 to 642 (32 residues), 13.7 bits, see alignment (E = 3.1e-05) amino acids 734 to 766 (33 residues), 13.4 bits, see alignment (E = 3.9e-05) amino acids 769 to 798 (30 residues), 18.2 bits, see alignment (E = 1.1e-06) PF13432: TPR_16" amino acids 746 to 799 (54 residues), 22.2 bits, see alignment 9.2e-08 amino acids 775 to 826 (52 residues), 24.7 bits, see alignment 1.5e-08 PF14559: TPR_19" amino acids 781 to 829 (49 residues), 26 bits, see alignment 5.3e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (891 amino acids)

>mRNA_5137 K13342 PEX5, PXR1 peroxin-5 (Rhodosporidium toruloides IFO0880)
MLASLAGGASCGPSNPLQQLSKTYGADRGAQQDHFGSQAGPSGSQSFRQSTPIQAHPSDP
SAAQFFQPHPSQPFDLSPLHRALTPTTAQPKPASPAPPAWAQAFVAQQGPPVAHSAQEQE
MFARAFGRPQQQVPVEQSAWRSEFHQQPATQVPQVPQAQPQAMSRLHGQGFSNVGPMMSM
ARPMGYASQQIAPDMQDVQMDRAREEQSGKVDWEKAFLAQEATPASQLITDTLPSSTTFA
GITETRPLTPPLRAHTPIADTQARDALAETAANLLSTVKSAEKQRLRSQNEQSEQRDVGD
KFAQSSFMELMRRLKDGEVAVEGDKVVEQVQPVAAADKGKGRARDDGWATDFAATMREPI
EREEEGRVGQAPPILRPGQSVAEHAHEQHAWAGGFDFKAFRDNQARDNQELLRSTMEGYD
ELGELWKDEDRTRAERERAAKGKGKERAPFQFQGDGGSFAHEEDMRDIVADTHVPLAQSS
WEEDFDDPSMIVGGHQLGGGVARRLSGAGMSAQQKEWDLLQSEWDNIEVSAAGLKPKNQE
EAMAAASTSATSHGYAFAQNNPYVGAHYHSSSTHHHAQHQGNATDLAAVLSERHDSLLQR
EADVQHDPTNASAWLSLGLKQQQNEREELAIAALRRAIELDPLVSNGAAHLALAVSYTNE
GRRGESYEEINRWVSAQTSENRAYANEIEQYRNLFGATLPDNTAERHAYLSNLLIRLAQH
SAEKGEGAAGVDADVQIALGVLFNSSEEYDKASDCFEAALSVRPDDPLLYNRIGATYANS
GKTDLAMQYYHAALDLDPGYVRARFNLAVATMNLGQYEDAVHHLLTALSVQEADMEYDNM
QQTPPVNAAGVSHALWDSLHVSLIQMHKSELAPLCSARDLRGLLQAFASDR