Protein Info for mRNA_5186 in Rhodosporidium toruloides IFO0880
Name: 13554
Annotation: KOG0023 Alcohol dehydrogenase, class V
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00120, [EC: 1.1.-.-] (inferred from 52% identity to uma:UM02888.1)Predicted SEED Role
"Alcohol dehydrogenase (EC 1.1.1.1)" in subsystem Fermentations: Mixed acid or Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 1.1.1.1)
MetaCyc Pathways
- 3-methylbutanol biosynthesis (engineered) (6/7 steps found)
- ethanol degradation II (3/3 steps found)
- pyruvate fermentation to ethanol II (2/2 steps found)
- pyruvate fermentation to isobutanol (engineered) (4/5 steps found)
- superpathway of anaerobic sucrose degradation (14/19 steps found)
- acetaldehyde biosynthesis I (1/1 steps found)
- phytol degradation (3/4 steps found)
- salidroside biosynthesis (3/4 steps found)
- L-isoleucine degradation II (2/3 steps found)
- L-leucine degradation III (2/3 steps found)
- L-methionine degradation III (2/3 steps found)
- L-valine degradation II (2/3 steps found)
- ethanol degradation I (1/2 steps found)
- phenylethanol biosynthesis (3/5 steps found)
- butanol and isobutanol biosynthesis (engineered) (5/8 steps found)
- L-phenylalanine degradation III (2/4 steps found)
- L-tyrosine degradation III (2/4 steps found)
- pyruvate fermentation to ethanol I (1/3 steps found)
- pyruvate fermentation to ethanol III (1/3 steps found)
- (S)-propane-1,2-diol degradation (2/5 steps found)
- acetylene degradation (anaerobic) (2/5 steps found)
- ethanolamine utilization (2/5 steps found)
- cytidine-5'-diphosphate-glycerol biosynthesis (1/4 steps found)
- heterolactic fermentation (11/18 steps found)
- serotonin degradation (3/7 steps found)
- mixed acid fermentation (9/16 steps found)
- hexitol fermentation to lactate, formate, ethanol and acetate (11/19 steps found)
- superpathway of fermentation (Chlamydomonas reinhardtii) (3/9 steps found)
- superpathway of Clostridium acetobutylicum solventogenic fermentation (5/13 steps found)
- superpathway of N-acetylneuraminate degradation (11/22 steps found)
- noradrenaline and adrenaline degradation (4/13 steps found)
- superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation (6/17 steps found)
- L-tryptophan degradation V (side chain pathway) (1/13 steps found)
KEGG Metabolic Maps
- 1- and 2-Methylnaphthalene degradation
- 3-Chloroacrylic acid degradation
- Benzoate degradation via CoA ligation
- Bisphenol A degradation
- Drug metabolism - cytochrome P450
- Ethylbenzene degradation
- Fatty acid metabolism
- Glycine, serine and threonine metabolism
- Glycolysis / Gluconeogenesis
- Limonene and pinene degradation
- Metabolism of xenobiotics by cytochrome P450
- Naphthalene and anthracene degradation
- Retinol metabolism
- Tyrosine metabolism
- gamma-Hexachlorocyclohexane degradation
Isozymes
Compare fitness of predicted isozymes for: 1.1.1.1
Use Curated BLAST to search for 1.1.-.- or 1.1.1.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (341 amino acids)
>mRNA_5186 KOG0023 Alcohol dehydrogenase, class V (Rhodosporidium toruloides IFO0880) MSSPEVPSEFHGWCAVSKDSIEGKFVWQEYEPKAFADDDVDIRIMYCGVCASDLHTASGG WGEVDYPQVVGHEIVGEVVRAGSEVKARQAQNDSCLECVQCKYCDENLVGTYNGRYSREG PGKGPKSYGGYADYHHAPSHFVVKIPDGLDHAIAAPMLCGGVTVYSPLVQYGAGKTAKDV GIVGIGGLGCALGANVTAISHSESKKADAEKMGATRFIATHSGSDDDFAPYKRSLDLIIC TTNDASMPLIGYLSLLRPGGNLILVGAPEGPVARELPALPFLLGGVSLGGSAIGSPSTIK EMLELAAKQNIKSWIEKRPMEASAPLRFFCAHERRSYASSR