Protein Info for mRNA_5189 in Rhodosporidium toruloides IFO0880

Name: 13557
Annotation: K14290 XPO1, CRM1 exportin-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1075 PF03810: IBN_N" amino acids 35 to 99 (65 residues), 50.5 bits, see alignment 5e-17 PF08389: Xpo1" amino acids 113 to 256 (144 residues), 133.1 bits, see alignment E=2.7e-42 PF18777: CRM1_repeat" amino acids 334 to 369 (36 residues), 70.9 bits, see alignment (E = 1.5e-23) PF18784: CRM1_repeat_2" amino acids 405 to 472 (68 residues), 114.5 bits, see alignment 4.2e-37 PF18787: CRM1_repeat_3" amino acids 485 to 535 (51 residues), 102.3 bits, see alignment 3.5e-33 PF08767: CRM1_C" amino acids 710 to 1029 (320 residues), 411.9 bits, see alignment E=5.8e-127

Best Hits

KEGG orthology group: K14290, exportin-1 (inferred from 70% identity to cci:CC1G_03919)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1075 amino acids)

>mRNA_5189 K14290 XPO1, CRM1 exportin-1 (Rhodosporidium toruloides IFO0880)
MEAILDFSQPLDVGLLDQVAQVMLTGAGTQQQQASTVLAQFQENPEAWQRVPAILETSSN
TQTKYIALQILDRLIKTRWKVLPEEQRSGIRNFVVQVIVKTSSDEATLKREKSFLNKLNL
ILVQILKQEWPHNWPTFIPEIVTSSQANLSICENNMVILRLLSEEIFEFSAEQMTTAKTK
AMKAQICQEFAEVFSLCVEVLEKADKPSLIKVTLEAMLRFLNWIPLGYIFETPVIDYLIT
RFLEVPEFRNVTLKCLSEIGGLQIGAEYNSKFIILFNMVMTSVNKMIPPSTDIAGAYENS
SDADQELVLNLAIFLTNFLSAHVTILETPSHRDVLLNAHLYLIKISQVEEREIFKICLEY
WAKLVADLYDEMQKFPGGELAANPLLSLGGMSGFGGAGGAGGQGRRGIYTEVLSNLRLVM
VERMAKPEEVLIVENDEGEIVREFLKDTDTVVLYKSMREVLVYLTHLDVVDTEMIMTEKL
SKQVDGSEWSWANLNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKDNKAVV
ASNIMYIVGQYPRFLKAHWKFLKTVVNKLFEFMHETHEGVQDMACDTFIKIAQKCRRHFV
MQQSGESEPFIEEILRNLQRITSDLAPLQIHTFYEAVGYMISAQPNKPQQELLIANLMQA
PNAAWDSLMAQAAQSGAGILSDPENTKILSNILKTNTAACSSIGTFFLPQLARIYMDLLG
LYTAVSGIISATTAEQGLIATKTPKVRGLRTIKKEILKLVGETYIRKAEDLEQVNRDLIP
PLLEAILGDYKQNIPAARDAEVLSTMVTIVSRLGPLMTDKVPAVLDAVFECTLSMINQDL
TEFPEHRVAFFKMLRVINLNCFDALLKIPAPQFKLVMDAVVWATKHTMRDIGDLGLTICV
ELIDNVVAAGPETSNGFFQAYYLALLQDMFFVLTDADHKSGFKSTALVLARLFKLVEQGD
IQAPLDPSAANNGVFVADYTANLLKSAFPHLQPAQITAFVSALREQYGDFNKFRITLRDF
LISLREFQGEEASDIYAEEREEEAKRKRDEDQARAAAVPGMLKPSEAMTGEDEEL