Protein Info for mRNA_5220 in Rhodosporidium toruloides IFO0880

Name: 13588
Annotation: K09241 GAL4 transcriptional regulatory protein GAL4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 734 transmembrane" amino acids 310 to 328 (19 residues), see Phobius details amino acids 347 to 369 (23 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details amino acids 415 to 432 (18 residues), see Phobius details amino acids 597 to 616 (20 residues), see Phobius details PF00172: Zn_clus" amino acids 12 to 43 (32 residues), 24.7 bits, see alignment (E = 2e-09) PF04082: Fungal_trans" amino acids 277 to 443 (167 residues), 70.2 bits, see alignment E=1.6e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (734 amino acids)

>mRNA_5220 K09241 GAL4 transcriptional regulatory protein GAL4 (Rhodosporidium toruloides IFO0880)
MLADCLYDGLQCEQCKRRKLKCSRTVPTCTFCAEHSHDCIYSKIIRTPLTRKNLDAAEKR
IANLEALLARHYSEREITRYEEDGTLPRLQGAKGASPDTGSSRPGTAHSLPPPPPSTSPG
AYPTPASQVAPLPQPPYQHQPVASTSALPYAPPVAQPYGYPPYSSPNHPHPPIFVSAPAT
SKPTATPTIDIKPPLPARDETDDADGTGSLSLASNGKPPPGYLGSLSGAALLQFLQRCAA
DVNLSAAGAAGKCAASPSSSTTNSLTAILPDQLAGYITSYFNHFHLLYPVLHESSFRAQL
AEIVPRPGGAAWTLLYYVVLGLGSMCTLTDTNEGETLTLYEQAISHVAAALFESASITSV
QAFCLLANLAQKTNHVSIGTVFLGIALRMAINLGLHTEASGRHLSVFEQEMRRRAWWLLF
AFDSGSQLTFGHPNTLPTTGVDVLPLVSVPDTVFTPSLTTRPQSFPDPTIYSSLIFQCFF
HQMASQIVARLTYYPNLPITESLILYHEVDSLQSALPSFFFSSPPAWFDFPRHLLAWRLD
NLRMVVLRHTFLKVSLMQGPVTEEEERGWAKCVDCAAEVVRSVQRFSSEAQRTCMEWWYA
LHFIIPSTFIPLIALRVRPASPSVIEWVDVVQSARSVLERVPHTLLKFTATRCLAIISAV
ADLSIARTDSRLSATNEPSAVPDSDFTNFLEMLAGQGPGFEGEAASPVQAPGLLPDLDTL
LQWFTPSGSPLPVV