Protein Info for mRNA_5225 in Rhodosporidium toruloides IFO0880

Name: 13593
Annotation: HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 858 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 735 to 756 (22 residues), see Phobius details PF00722: Glyco_hydro_16" amino acids 338 to 493 (156 residues), 111.4 bits, see alignment E=1.8e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (858 amino acids)

>mRNA_5225 HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899 (Rhodosporidium toruloides IFO0880)
MPSLSTSRAFALLASLAAVANAAVTPTEPSNAKQVFTAGQKCSFKYDLDKTGNWTSMDVD
LMTGDDLHMINITRVASGLDGSKGDGRHSFTCPRVDPPAPIYFYQFTMNGTDPVWTTRFT
LASPTNETVDAPYSKQFDGSDVPWGVGRLISAAPVSSGLYNDSSRPSASRATSSSLTSGS
AAPYWFTQGWPSQSTASASTASASTASKGWTWGQPTVSSAPASTTTSSAHKGITGFHEDG
RCDANNKCPETAPCCSEFGFCGTGRNCLAGCNPLASFGPTACAPVPACKNGEYRVNWNAN
RVLRNSSVWNGDADTYDWMVDDLGKADLGTVTADGSSGTSALTLSLTKEANGTTISSTRS
ILYGNVTAMIKSVAGAGIVTTFSIASGTGDEIDWEFTTNSSTTAQTAYSSRGQVNGYESG
MAVNVTDREKNFHDYTISWTPDQLTWLVDNVVVRNVSRNSTADPSNPHVFRYPRTPARIR
FFIWAAGVEGASPEVVDFGGGMVDWDDKQYRKDQYFASYVSSVKVACYNPGLLSTLPIGQ
DAPYDEPGAKPLSPDPFSGVANAFSSRSSSVSSSSSRSPWWNPPSAAAEGANPLPTLFAG
WGGRARLGKREETTVSVREKRADANSSPASYQYTGLDMNGLLNILGGQAVTTTNDDSATG
LNWPGVSSISSSVFASAPTSASSASSDSKSASSSSAVSAATASATSSTSAASPSETSEPQ
TIQEKWNQLGTPAHIGIYIGGGLAALFILVLVGWLWRKAASSRKQTPGPDARGPYEPIGD
MGEMQPAGAIYRGNGQIEPGQDLYSGGQMPYMAAATAPAPAGPSASRKSSSASTRSKYDQ
MAGSVPGFVSSSSLRAKK