Protein Info for mRNA_5230 in Rhodosporidium toruloides IFO0880

Name: 13598
Annotation: K17906 ATG2 autophagy-related protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1970 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF13329: ATG2_CAD" amino acids 1131 to 1258 (128 residues), 32.8 bits, see alignment 5.8e-12 PF09333: ATG_C" amino acids 1874 to 1970 (97 residues), 122.6 bits, see alignment 7.2e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1970 amino acids)

>mRNA_5230 K17906 ATG2 autophagy-related protein 2 (Rhodosporidium toruloides IFO0880)
MPWTLSSLLSARLTAAASYLPSVPLPANLQQRLVAFLLRRAIGGFVKGGGEGLGDEGRIE
ADVREGRFVVRNVEVDEQAINALLSPPHLPTSDGDSVPDSPLRFESGSIGTVTALVAWPL
TKLDLVVDQVDLVFRVSNSPRPAESPPCPPSSEVAPTPREDRSDPLAESHISVSIAHDFI
SHELLPSEDAELRASLHLSPSLASSVDLPGAFGGAARSEETEQEAEQVETTVLAGLIERV
LARLGVKVKQVRVRLLWETEGMEGENELELRIDEVEYTGDAGEPGAAKVPLVRSLQISPP
QVYLRLAEPLPPSSTISSRPATDRRYSSESDSSSSSSGDEADLLAMSQSIADLRTSVYST
RSGGSSSTGRSDLFASARSAPFQSVTEEPEEDDPFHDPDAEAHNGSSESSSPDQRGPPQL
ILSLGPSEKPITVLLSTAQPESDGDKPSKVSRRPVVTLSSDIDSPWTCAITAEQLVTLLS
LATRLSPAASSTSTPPQAPPSARSSATSLNLSFSLRAFHLLVALPPKASVSSSPFPPAIF
SHPDTAVRAPHLRLRLDGIGFTSDASSGMRFRIDHIALTETSASPGGVGGEDVWRTLPLL
VDDVALANRSSTNESANSPDWVRLATAGEGGAGAVYGRDWRFTLRTAGRKSTSKGEDDAA
KTPALVLSASSGEGLAVDLAPLHAFVDLSAIGRLLPLVEMCMDALPPSSESAVSQDSPTA
PTPRPSSPAFPAEAPPRDILDDFGDAPETPRHASCQEAFALLVRCPLLRVEIRCPAPKDY
RRSTRDAEVVRSGRLVVDVFSTKLAVGKSSTKLDLEAFEAFFALKSDVQAARFLQISPLA
PLTEDPSAVCPCLTANFGAAYPTFDITLPLVRVQLDKPTFDGLQLFADDISQYVGIELGE
SSFGSSDEEHHGMRGTRMIGSRYFGAKSFMHPRRRRRESETDSTASTATVRGRPGEGGFG
GRAKGRTACIIVSVTDAVVDLHLGTLTAGSTNVRHLHLAASDVGLDVELLKDARADLQAK
LSVTDVKIEDQSKTTAPVTILSRTMPRDLTMPSLALVQVGFSSSTERETNLKESKVQLTL
SDFTYYLSADLAWLQELGNFARAPEGAFEHVVPNELTRLRVRLNSICAHVSAPSSSSHLV
FVVAEARLRTDLMPDLPRTTLLADVTGLRALAIDSDGDLAETAPSLRQQEAWRFWKAKGF
APIAHVEQASIEARQGNGLVLPDLDVLVNGAKVDVSLCADTIAGLTSFASAFAADLSPTS
SHSSPRTSTAFRRRRGTGKNLGDLLASVDPAAFEQAPPLHDLPEMLDDDVPANTTYISDA
LRRSTPRSAATKTHHRTASSASLPAFGQADSAQLLSEIDGETIKTLVPGGLQIIEEWLAE
SRIDDDEHSATASSIRWRLINSDISICLHEGYDWAATRKAIEEEAKAVRRRLEKIRQLLA
SGQAADASAETASVLMFGSVQLGLPPGASELPAKELLAAINEELDDSPNSDAVSTAASSW
QSFPGGTPPTTARPPAPAVVGKLRKRLTRSKAFAIEINLRDLNANFDSYSTSLSIEASKL
LGVDPALSSKTQADVGDLEIIDNIKTSTWRKFLTELRPSEGGVMRPTGGRMARLELRAVK
PVGKLPQAHDELVAKLRVSPLRLYIDQDALDFLKSFGAFERPVADAPAQANRASQEPFYQ
RVEILPVKLKVDYKPKRVDYNALRRGKTAELMNFFHFDGSEMTLRHLVVTGVSGTSTLSN
LVQDIWSPDVKAHQLADVVGGIAPIRSVVNVGAGMANLVLLPMEQYRKDGRVLRGLQKGA
QAFAKQTTLEAINVGAKLATGTQVILEQAEHVLGAKFSQPVSAEAIAPFAPDVPHDSPNQ
LEDSLVDDGLPDLRSRYAEQPADFREGVQSAYKTLGDNFKEAAQTILAVPMEVYERSGNE
GAVRAVVRAVPIAVLKPMIGASGAVSKALLGLRNTLDPDAQQSELEDKYK