Protein Info for mRNA_5260 in Rhodosporidium toruloides IFO0880

Name: 13628
Annotation: K02263 COX4 cytochrome c oxidase subunit 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 transmembrane" amino acids 90 to 108 (19 residues), see Phobius details PF02936: COX4" amino acids 22 to 153 (132 residues), 132.2 bits, see alignment E=7e-43

Best Hits

KEGG orthology group: K02263, cytochrome c oxidase subunit IV [EC: 1.9.3.1] (inferred from 50% identity to cci:CC1G_08304)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.9.3.1

Use Curated BLAST to search for 1.9.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (155 amino acids)

>mRNA_5260 K02263 COX4 cytochrome c oxidase subunit 4 (Rhodosporidium toruloides IFO0880)
MLRSSALRVVRQAPLSRAASTQVAPVSLSNIEVSWKNLSPAEQEQTFKHLEELQKKDWKE
LSLDEKKAAYYVAFGPHGPRAPLEVNTGKTIGGVIAALGAASVLFYLMRKNAQETPKTLS
KEWQEESNARLREQQADPFTGLSSKNYQGKGQVTF