Protein Info for mRNA_5265 in Rhodosporidium toruloides IFO0880

Name: 13633
Annotation: K18749 LSM14, RAP55, SCD6 protein LSM14

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 PF14438: SM-ATX" amino acids 2 to 77 (76 residues), 36.4 bits, see alignment E=7.2e-13 PF12701: LSM14" amino acids 4 to 78 (75 residues), 99.8 bits, see alignment E=1.1e-32 PF09532: FDF" amino acids 364 to 479 (116 residues), 31.6 bits, see alignment E=3.9e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (539 amino acids)

>mRNA_5265 K18749 LSM14, RAP55, SCD6 protein LSM14 (Rhodosporidium toruloides IFO0880)
MAAQFIGSHISLVSKSDIRYQGVLHSIDPAAATVSLERVRSLGTEGRKENPAEEVPASDT
VYDFIVFRASDVKDLQIEAPTANESTPQDPAIVGTAAPASSAAPAATSPAQPAPSSPPKP
AQPQAPGPQSPFLPPPPPHLAGGSPFAPYPPPFPSPFGAPGPFGPPGGFGGPLPPHPYPG
FGAPGPFGAPGPFSPGGPGGFPGQPPFPPQQPPHQQQAPSQAPQQGPVSPAAPAPATQPQ
KSDAPTSSAPAAPPTAPAPVTPNETRPETNGAAMISWSPTAPTDAAQTASPKKQPADIEQ
LAKDMSRANLGQAPRQQQGGRREDGIGPSLFAGSSQGRENQNRAGRALQPYPGGAAGKQA
VPVPDTEFDFAKSNAAFQKPSALPVADAAAGPSTGGDTAGEGEAQAPEGDDFVVPPPTED
FYNPKKSFFDSISSDAKTRTDPAQQSAMGRYGGMGGGGYGGGRYDRQKERERNMEAFGET
GAGLGRGGHRRGPGGGGRGRRQGGGGQGGGQGGGQGGGQGGGYGGGQRYGGRQQQQPQQ