Protein Info for mRNA_5266 in Rhodosporidium toruloides IFO0880

Name: 13634
Annotation: K03262 EIF5 translation initiation factor 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 PF01873: eIF-5_eIF-2B" amino acids 8 to 127 (120 residues), 131.2 bits, see alignment E=1.8e-42 PF02020: W2" amino acids 319 to 398 (80 residues), 62.9 bits, see alignment E=2.6e-21

Best Hits

KEGG orthology group: K03262, translation initiation factor 5 (inferred from 53% identity to lbc:LACBIDRAFT_293715)

Predicted SEED Role

"Eukaryotic translation initiation factor 5"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (401 amino acids)

>mRNA_5266 K03262 EIF5 translation initiation factor 5 (Rhodosporidium toruloides IFO0880)
MATVNIRRDVKDSFYRYKMPVLLTKIEGRGNGIKTVLPNMADVARALNRPASYPTKYFGS
ELGAQSTCNDDTERYIVNGAHDQNRMRELLDGFIDKFVLCQSCKNPETELIVSKDEYITA
DCKACGHVGDIDMRHKLSGYIVKNPPKKASKKGKKGAAGADSIAGQPGQVDDEDDDQDEL
TRKIREGAAEVMSEEQAAKLIAQREADEDWGEDTSPEAVAARMAALGVSGDSSLLAGDDD
DEEAGGPYAEFATWVKENKDEVSAAEIYKEADSRGVAKKTHRLLPYLFPALFTDKVADEL
PKYLALLAKLTNSDKAVKALGGGIEKLLGDDYPDAVAQTPKVLMVLYQNDIMDEDAIKHF
ATHVSKKYVAKDVSKRVRKAAEPMVKWLEEAESDEEESDDE