Protein Info for mRNA_5269 in Rhodosporidium toruloides IFO0880

Name: 13637
Annotation: K03320 amt, AMT, MEP ammonium transporter, Amt family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 521 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 106 to 127 (22 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 225 to 247 (23 residues), see Phobius details amino acids 259 to 281 (23 residues), see Phobius details amino acids 300 to 317 (18 residues), see Phobius details amino acids 329 to 349 (21 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 387 to 407 (21 residues), see Phobius details amino acids 415 to 435 (21 residues), see Phobius details amino acids 463 to 485 (23 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 105 to 507 (403 residues), 404.9 bits, see alignment E=1.9e-125 PF00909: Ammonium_transp" amino acids 107 to 507 (401 residues), 350.6 bits, see alignment E=5.1e-109

Best Hits

KEGG orthology group: None (inferred from 62% identity to uma:UM04523.1)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (521 amino acids)

>mRNA_5269 K03320 amt, AMT, MEP ammonium transporter, Amt family (Rhodosporidium toruloides IFO0880)
MVNITCVLTLALSLGRGRRRVIATPLRSYRALGTHRQRPACLLRTTRTTSTHALTPSSSR
RAHSYGDLIASSQLADPSSYSIQPGGTDMIVTLAGGQVASYDPGDIAWLLACTALVWLMI
PGVGYLYSGLVRRKNALTVLFLTMLAMAIISFQWFFWGYSLAFSPTGGKFLGDMHFFVLR
HVLETPVPQANNKVPQVAYMIYQNMFAALVPAVLIGAAAERGRILPACIFFFCWSTVVYC
PVAHWVWAPEGWAFQYGVLDYAGGGPIEICSGVTGLVYSIFLGKRRGFGTHILSFKPHNV
SFVIQGTILLWVGWLGFNGGSTFAANIKAAVAIVNTNLAASFGGLAWMLLDYRLERKWSA
VGYCTGAICGLVAITPAAGYVGYGPSIFIGVVAAAMSNLLTTLKGFFAFDDAMDIYACHG
VAGICGLVFTGVFAQADIAATDGYTVIDGGWLDGHYIQVGKQLGYICAVWGWTFVVSYAL
MFLINLIPGCKFRVDEEGEIIGVDEVEVRSRLLPRAFHFRG