Protein Info for mRNA_5290 in Rhodosporidium toruloides IFO0880

Name: 13658
Annotation: HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1256 PF01388: ARID" amino acids 645 to 743 (99 residues), 48.2 bits, see alignment E=7.4e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1256 amino acids)

>mRNA_5290 HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774 (Rhodosporidium toruloides IFO0880)
MHSGWEQAQQPGFGPQYNGQLQAGQSQQHAFAQGQQHASSHQGGGVHASAVGGFAGDQGA
WQGYQQPLQQQNGGYYQPPNQQVQQGGYQPVASTSAPVGGRQEQGGYTAGQQYGGVAQGM
QYGVQSTHLRAMPQYPPQQPDSSGYAHFAQPPPAPLAQHPGPAPSPAPIQPQQHPTHHPP
PPASAAYGTNFLQHSMQSFVPSSATMLSPTAQRFQSNPSPEHTQPHPPNPFPQQQQQQRP
PPPPSSSHPPQQPPTPAQHLSPSAPTAAGLQNHLARFESITQHRQRLQQLDAQRNAVIGA
GGGAEQVAQVERQMREVKTRELTLLSECETFVRQHGGAGAIQRYLEQMRANQQRFQQQQQ
QQFSQQTMPAQPAYSAQGYPQVLPNGGVQQGYSNAPQQPFDAQQQYPAAAPPPPRPAPSP
RPQPPHQLHPQQQLGAVPSSSFNLQQPQQYPPAVADQQNASVDRSQLHPIPFPPPSSQDP
TFQPPMRVLSVTMHPPSSSQPFQPGLPPQSQPPNPVNPSFPSLPHAPLPPRQAPMTASSA
FPSDPRAQSAAQRVLPVSRAQVGQEPLPAPDGPMSNLVTREEWERMEKEREEREKKEGNP
FGFPQGAGVAEKARRGKVRHPTQVLAEEVEGQPTLAELLAKVTPQKFYDVLKPLLAKHGQ
TLTPESHTLEGRPIDLFQLSQVVIGQGGGYVKVDADNAWPRVASLLRSPPSPAGSFATPP
APPPTHLPTHLRDLYMRLLARYEDGWSGTMLKQREKEIGLKGARELLLAKGKDAQAAQNG
QAEGAHVGPTVQMGEPYKTPTMQIQHLQIVPSSPVSVNGTFGVSSAPLAPLSAAPSALVS
SPRATLPASSMSSMFANSFSAFSLAPTDIDISPSVTSIPTGTITSTDPSTLAPSSPGKSN
LLRPTTPHNGQQRVTSPGTPRSSAAAAGQVAPFSTAAAAASPAQPRTSTPRPVLLAREAS
GGSSSLIGSPNAGEGEKGRSRAASVASSSRKRDRTREIGDEIEVVGDEGRRKREGTGAVL
TPEAGSSGPTRQNSTSTDGGSSGISGKLGMTPSRPAGGFVSSPAAMALSDGTPDLVANKA
LRPDTATTVSSTSASPHSVGGGEIPLPTAPLAMPTSMQTVTPSTPVNSGLALSAAGLSLS
TPAQPSSSAPVKSPPDFDFLSLTSPALGGLEASPMLFNTASWSTTPSAFDSFTSSTETDS
FGLSNTGDIFVGLGGDDAATNGAKSKQQLHPGADDDPWATSSLLDFEFVADSFTSS