Protein Info for mRNA_5300 in Rhodosporidium toruloides IFO0880

Name: 13668
Annotation: K03023 RPC3, POLR3C DNA-directed RNA polymerase III subunit RPC3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 616 transmembrane" amino acids 22 to 42 (21 residues), see Phobius details amino acids 57 to 68 (12 residues), see Phobius details PF08221: HTH_9" amino acids 17 to 74 (58 residues), 35.7 bits, see alignment 1.2e-12 PF05645: RNA_pol_Rpc82" amino acids 182 to 362 (181 residues), 35.1 bits, see alignment E=1.9e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (616 amino acids)

>mRNA_5300 K03023 RPC3, POLR3C DNA-directed RNA polymerase III subunit RPC3 (Rhodosporidium toruloides IFO0880)
MSTSASAIQSGLERARLLEHLVWQQFGGAVGEIALILLSRGALSFPQLIKLTSLPPALVH
SSLLVLSTHTLLFHSETEVGGRLTELYELNHDAIERRIRGGLYVEMASEWEGGEELSTVI
EVLWKEGMLTREDLYEVVRQKIMHKREMELGMEQEDPKGKKRARMEDQAMEAAERLVRKA
FAQGFVNIVTPGSQLSPSSLEIKWEEELRSTIKGIPTTKELARVKKMLREKQEEWAEEEQ
ARARGKGAEVEAEQDDDEPKRKKRRKKGKAAPVDSSDEDELEDDGFVVKKPDPPLPEEVF
FKINEERFHIRWRAQLLRSYAAELYNSHVATVFGVILDIVSAETQLMNEPISRFVSLHEI
NKVFDRLPEASKPDLSQTFAKHKQDSSWPPKRDRSGDYILAICEALSGLDQWGVSTREHF
LMQQGEGSHAKWAVDWRTLGKAMKRSLVEAVVRDKLGEHAIRCWRILEAKGKLDEKHLAR
LAFLSVKEAREVLGRLSSSGLIEPQEVPRSADRAPSRTLYLWFVDFNKVVTSLIAHHYKA
LANLQAQRQHQVKERRGLVDKRERTDVRENEALLTKRDQEAIAELDKTMEALAVAEQRLD
EQLFVLREFDPDPAVM