Protein Info for mRNA_5302 in Rhodosporidium toruloides IFO0880

Name: 13670
Annotation: K08711 ABCG2.PDR, CDR1 ATP-binding cassette, subfamily G (WHITE), member 2, PDR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1511 transmembrane" amino acids 509 to 531 (23 residues), see Phobius details amino acids 538 to 556 (19 residues), see Phobius details amino acids 607 to 625 (19 residues), see Phobius details amino acids 631 to 653 (23 residues), see Phobius details amino acids 663 to 688 (26 residues), see Phobius details amino acids 771 to 790 (20 residues), see Phobius details amino acids 1183 to 1205 (23 residues), see Phobius details amino acids 1216 to 1235 (20 residues), see Phobius details amino acids 1255 to 1283 (29 residues), see Phobius details amino acids 1303 to 1324 (22 residues), see Phobius details amino acids 1336 to 1364 (29 residues), see Phobius details amino acids 1456 to 1480 (25 residues), see Phobius details PF14510: ABC_trans_N" amino acids 55 to 141 (87 residues), 43.8 bits, see alignment 8.3e-15 PF00005: ABC_tran" amino acids 165 to 324 (160 residues), 60.7 bits, see alignment E=5.8e-20 amino acids 867 to 1017 (151 residues), 63.6 bits, see alignment E=7.3e-21 PF01061: ABC2_membrane" amino acids 490 to 712 (223 residues), 118.5 bits, see alignment E=7.5e-38 amino acids 1165 to 1379 (215 residues), 149 bits, see alignment E=3.3e-47 PF06422: PDR_CDR" amino acids 723 to 813 (91 residues), 101.9 bits, see alignment 3.7e-33 amino acids 1438 to 1477 (40 residues), 27.6 bits, see alignment (E = 5.7e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1511 amino acids)

>mRNA_5302 K08711 ABCG2.PDR, CDR1 ATP-binding cassette, subfamily G (WHITE), member 2, PDR (Rhodosporidium toruloides IFO0880)
MSLVGNFTTNTDREDHRHQSRGKRTSEQDQTSLSSNEDQQTLDEQRRISTDVTGLARTMS
RRSQPGDVGGVEGDPLRPQEGSVFDPWSENFKPDLWARAVYDLSANDPHTGPRRTGGIAF
EDLGTYGYAAGTEYQATVGNMPLKAIGSLKGLLGAGKGRKVNILQGIDGVLESGETLVVL
GPPGSGCSTFLKTLANETHGFFVDEGSKINYKGITPKQMRKNFGGEAIYSAETEQHFPML
TVGQTLEFAAQARAPRHPPGGLSQREWAKQLAAVVMAIFGISDTKDVKVGNDYIRGVSGG
QRKRVSIAEVALAGAPLALWDNSTRGLDSATAVSFCQTIKASAELTGGVACVAIYQAPQP
AYECFSKAIVLYEGRSIYFGPASKAKAFWVDRGFECPAQQTDPDFLTGLTSPAERRVRKG
WENRVPRTPEEFERIWKDSDEYRALKAELGQYDQRHPIHGEELEAFKASRRAQQAKSVRA
GSPYTLSYGQQIALCLRRGFQRLAADPSLTFFQLFGNSVMALIVSSVFFNLQPVTTSFYS
RGSLLFFAILLNASRIHSLDTRREAFGSALEILTLYAQRPIVDKQARYRMIHPSAEAFAS
MATDMPYKILNAILFNIIIYFMSNLRREPGHFFFFLLISFFTTLVMSMFFRSIAALSRSL
SQALVPAALLILALVLYTGFAIPTHYMLGWISWIRWLNPIQYSFEALMVNEFNGRDFTCN
QVIPSGPGYPSLTSGNAVCGVAGSTPGSSVVDGTTYLNQTYSYYASHKWRNFGVLFPFLF
GLMGIYLAASEWISESKSKGEVKVYPRTRVPKHDKVGSDVEAGASTPQDSRDEDPAKDVN
IQRQTAIFHWDDLCYDIPVKGGTRRLLDHVEGWVKPGTLTALMGVSGAGKTTLLDVLASR
VRMGVVTGDILADGMARTESFQRKTGYVQQQDLHLSTASVREALQFSAILRQPASTPRAE
KLAYVEEVLKLLQMDKYADAIVGELGEGLNVEERKRLSIAVEMVAKPELLLFLDEPSSGL
DSQTAWSVLDLLETLKNAGQAVLCTIHQPSAQLFDRFDRLLFLARGGKTVYFGEVGEQSR
ILRSYFERNGSPQFPPGVNPAEYMLEVIGAAPGSHTEIDWHQTWLDSPERAEVKKELAYL
KANPKPAEAKDDKWASTEFAVPLTTQFVEVQKRVFQQYWRSPVYIYSKTVLCSLVPLFIG
LSFLNAGTSIQGLQNQLFAIFLLFTCFGQLCQQIMPQFVKQRESYEVRERPSRTYSWIIF
MLTNILIELVWNTLMAVIMYFCLYYPVGFYKNAEPGKLHERGALFFLLVLAFLLFTSTFA
HWMISFNETAENGGNIANLLFSLSLVFCGVLATPDVFPGFYIWVYYASPFRYLAEALLAT
GVGGTRVQCAASELLSFPPPGGSTCGDYMATYIQAAGGYLVDPSSTSNCQFCSISDTNTF
LKTFSYDYDHRWRDFGIMWIYTIFNIAAAILCCAFDSLSLSGDSASDARSALQTGSPGWC
VPPHGGLFVRR