Protein Info for mRNA_5342 in Rhodosporidium toruloides IFO0880

Name: 13710
Annotation: KOG0692 Pentafunctional AROM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 415 to 431 (17 residues), see Phobius details PF08501: Shikimate_dh_N" amino acids 38 to 122 (85 residues), 75 bits, see alignment E=2.4e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (503 amino acids)

>mRNA_5342 KOG0692 Pentafunctional AROM protein (Rhodosporidium toruloides IFO0880)
MRLLLSSALAVLLAGLYYRYMLEDDMPVPVEGQRDFFLFGSPISHSLSPLAHNTVFEQLG
LDATHRYRLHETPNFSDRSVQRLLRSPSFAGAAVTMPHKVEAMKYMDSLATEVKEIGSMN
TVVVSGKVVEGGKERQKLEGRNTDVDGIKRALLASLPLEQQGKAKPFGEGRSAIIIGGGG
TTRAAVYALSTMGLSPLWLINRDPKETAAIISTPSFAKYDLRALEREEQWTEEEAERVAC
GVGAIPSFEPVTEGEKNVYRLAEKVFSTSGNRPRVRPLLEMAYKPHITLMYKLAEKHGWQ
PIGGESFTLPHPILLALLVDTVSPCRHRGARQPSIRARRLLARALARHTRRRTATTRAEG
GGRSCGGPRTGGCRCASHCVGFSLLYCLQSYARLDISRTLACVRGRPDAARRFRRSGESA
FVISLALLLFARRSSALRTRSTWSSTTSSFSSSSPSSRRKTKTPSSPSAAKDSPKSPTAP
TKSWVRLSSMRARQGTSTGCIGS