Protein Info for mRNA_5346 in Rhodosporidium toruloides IFO0880

Name: 13714
Annotation: HMMPfam-Hamartin protein-PF04388

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1222 transmembrane" amino acids 298 to 319 (22 residues), see Phobius details amino acids 328 to 351 (24 residues), see Phobius details PF04388: Hamartin" amino acids 262 to 595 (334 residues), 28.2 bits, see alignment E=4.2e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1222 amino acids)

>mRNA_5346 HMMPfam-Hamartin protein-PF04388 (Rhodosporidium toruloides IFO0880)
MSTKDTLRQLTRLFSTSPSSATPVQQSFPGYALPSEVDELLNEHLRAFASAFPLTNAGGS
GSGQSEGERERTRWREGLLEIWATAEPLPGAERELHNIGRVSAFLLLLHKLSADVGNDDD
SALISRKDIGSVWWNAILRRTMLGTPKEAEAAALGAKSSQTRGRKTERDRKGKEPAPPSS
ADALPLYVSRQALAAATRMIVWGMEPSREQADKEEDWVSPFGLAILNEYEDRSLAKLKGL
DEGYGIRNLEECLIEWAERAPKAFFTRISPYLEPNGPAVLPSVSLILSYLTRNSTKAYHA
LSTPLIANLIIVALTTTCPATVNLASKCLAICVVTLPVIIGEHLFGIMAVYGRIVSWEMA
PDVGDEGEKLPTASEDAQNFLDDYGEAPPDPVTLFTVLYGIYPRNFAAFIRDAPGYLREK
GWKGATGDGKIDLVSGIVREKSGPILRMHTLNPALFQGEAALELTDTERWSRLEAADVMA
ACDRNVVLLTPGMAQDWRGVPIHTDQAVYEAEVTSLRRAPAFQTLVEGTPLESTAPTPKP
ASPGPSAPVSRAASRVRSPTPTSQGSTPTSTRVSTPHMPATTHFANFQALQSAGALASPA
SMSPARRSGSRLRDPSHGDAHPWPPVFDPAMSSVGPSSMSRRSSGVGSAGTGIGLLSPEL
IPFGGTTGGTSIGRSASPLPPMLSTAQLSAHLLRLETELVLLHGEVNFQNYLKQLHLQHM
GTLHREKVLESGAEAERQGLFRTVRTLRAQLRATQNTLDQLRSEQSATKANWTAHINDLR
DKLAGLREAKMKWEHDEKVLRAEVEDWKDRCEKKSRELETEGAAFLDLKNQNSLDAGKLA
RITEYEHRIQALTKTLAICDADLVKFVDQRKEMNLLVGEYKKSEYLREAVEAECKTLKES
LRSMENELADLRRRASSPSLPDSTLLAGPVASKDELALMRREMERLRARNAELEERLADV
LDEEEEGEGEPVRRPRERRSLIGQREGQLIHATLPRRWGNQSADVQAHKEARESLGLPTR
PLKSARLLKCALRSCFSFLSSSLHNTALMDTCRTPNEPEVINHDTCLPWPTLPELDFPLL
LHVYLAMTPDQRAQLKRHEGVPDADDEDDEVNEPEVKLDEDNPRRYIYDELAARREDEKG
VADLLAIAQARVKRYEELITSNSSRIGIYKIAFSILLHRHRLLQMILLNNKLECNNKVEY
LEQVRAMRQELEDAMRPNGYEV